| Protein: | Nup98-PA, FBpp03... |
| Organism: | Drosophila melanogaster |
| Length: | 1960 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nup98-PA, FBpp03....
| Description | E-value | Query Range |
Subject Range |
|
|
1647.0 | [0..1] | [1960..1] |
|
Region A: Residues: [1-883] |
1 11 21 31 41 51
| | | | | |
1 MFGGAKPSFG ATPAATSFGG FSGTTTTTPF GQSAFGKPAA PAFGNTSTFA AQPAQQSLFG 60
61 AAATPAQPAG GLFGANTSTG FGSTATAQPT AFGAFSQPQQ TSNIFGSTQT AASTSLFGQS 120
121 TLPAFGAAKP TMTAFGQTAA AQPTGSLFGQ PAAATSTTGF GGFGTSAPTT TNVFGSGTAS 180
181 AFAQPQATAV GASGVNTGTA VAKYQPTIGT DTLMKSGQAN SVNTKQHCIT AMKEFEGKSL 240
241 EELRLEDYMC GRKGPQAGNA PGAFGFGAQV TQPAQPASGG LFGSTAQPST GLFGQTVTEN 300
301 KSMFGTTAFG QQPATNNAFG AATQQNNFLQ KPFGATTTTP FAAPAADASN PFGAKPAFGQ 360
361 GGSLFGQAPA TSAAPAFGQT NTGFGGFGTT AGATQQSTLF GATPAADPNK SAFGLGTAAS 420
421 AATTGFGFGA PATSTAGGGL FGNKPATSFA APTFGATSTA STPFSNFGLN TSTAATGGGL 480
481 FNSGLNKPAT SGFGGFGATS AAPLNFNAGN TGGSLFGNTA KPGGGLFGGG TTTLGGTGAA 540
541 PTGGLFGGGT TSFGGVGGSL GGGGFGMGTN NSLTGGIMGA QPTLGIMTPS HQPIHQQILA 600
601 RVTSPYGDSP IFKDLKLSSE ADATRATNPA AQQAVLDLTS NQYKISTSNN PAPMKVKALG 660
661 STLNRKSLFD GLEEFDASVE GFNLKPSAKR LVIKPKVKSV EGGNPSSSIG SAPNTPQSRP 720
721 KGATPNKERE SFSGAIPSEP LPPAGNSPGA TNGRESQDNG RRESWLHPNN LEKVRQHNIQ 780
781 TGMDQGSPHN STLNELVPRK PLDTYRPSST VRLSVSTIPE NPFEDQSSTI ARRETFTSQQ 840
841 ANESVLSNRS NEAEDSAANQ SRLAIEAAAA EAADDESHPT GIV
|
| Detection Method: |  |
| Confidence: | 72.522879 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
|
Region A: Residues: [884-1031] |
1 11 21 31 41 51
| | | | | |
1 LRRVGYYTIP SLDDLRSYLA EDGSCVVPNF TVGREGYGNV FFGKEMDVAG LNLDEIVHFR 60
61 NKEIIIYPDD ENKPPIGQGL NRDAQVTLDQ VWPLDKTKHE AIKDPQRLLE MDWEGKLRRV 120
121 CDKNDTRFIE YRPETGSWVF RVKHFSKY
|
| Detection Method: | |
| Confidence: | 67.045757 |
| Match: | 1ko6A |
| Description: | C-terminal autoproteolytic domain of nucleoporin nup98 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.09735673847754 | bayes_pls_golite062009 |
| transporter activity | 1.78222455998598 | bayes_pls_golite062009 |
| protein binding | 0.99875460346231 | bayes_pls_golite062009 |
| structural constituent of nuclear pore | 0.972136557180743 | bayes_pls_golite062009 |
|
Region A: Residues: [1032-1275] |
1 11 21 31 41 51
| | | | | |
1 GLGDSDEEDE LPTDPKKAKI ATLEAQQRAN AEKMTLNSLR QAQKISEDAA RNLDPKALVA 60
61 GVASGFRPMD DTAEFLLMDK TQFFQAGGNS DFSMFDPPRQ RPTITSPTAV LAQEMVGNEA 120
121 HKMQLMKSSF FVEDNAPEDE PMETTGRLLR HRKFFNVEPL VWKDGASESS SQYDFEHPSP 180
181 ALPISSSVSE ASLMCDAHYE ETSSMATGSI VAAVKETKFE MPVTKAFKFV CKPKVAPIKL 240
241 RATT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1276-1801] |
1 11 21 31 41 51
| | | | | |
1 VPLPRSIAYE MRDNWIADLG FYKGRSFKLS FGPQNSLVLP STYNNMQNLK EFTGPSLPVS 60
61 MVFAPRSATD LSPSVMQLVE FNMVKGNEGF RESIIPHLEV QLNDCLSVNV EGSECPCIHP 120
121 DSGTKLVSKH FSESLKQRNA GLKEDYSVSV WSLLFALWGD HDELVDLEKN SHYMVMCRRN 180
181 LLSEWLENTL LGKDLLSKKV STHSYLEHML DLLSCHRVNE ACELAFSYDD ANLALVLSQL 240
241 SSGAVFRLLM EEQLFAWQQS KSDKYIDLER LKMYMLAAGA PMMQSSHGAI NLLENKNWLT 300
301 ALALQLWYFT APTSSITDAL NAYNDAFQAE ECYAEPPKPS YRDAPTDTKK PVYDLRYHLL 360
361 QLHSKRMHSL EETLNPITHT ADAMDFRLSW LLLQTLRALG YRHCSPLTEA RLSVDFASQL 420
421 ENEGLWQWGI FVLLHIKQQT QRERAVQQML QRNVSVSAKV ALYAEERFIV EELGIPMSWV 480
481 DYAKAVKAGA SGKHHLQAKY LLKAKHFATA HDVIFQHIAP DAIING
|
| Detection Method: | |
| Confidence: | 1.72 |
| Match: | 2pm6A |
| Description: | No description for 2pm6A was found. |
|
Region A: Residues: [1802-1960] |
1 11 21 31 41 51
| | | | | |
1 KMKYLHSLLI QFEDTEGSSI RVPNWANQGQ IFLDFIDISA KFKQIRSVTN IADINARWEN 60
61 LKPQLSELCS RISLLPCPTS KHRLCQSEIS QSLSCLVHGM CIVCPEMESS TVLKVALERL 120
121 PLPQEFASKE LRIWLEELLD KIQNEPPFSE RQQPTMMEI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
