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View Structure Prediction Details

Protein: SNF4Agamma-PI
Organism: Drosophila melanogaster
Length: 538 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF4Agamma-PI.

Description E-value Query
Range
Subject
Range
gi|25012391 - gi|25012391|gb|AAN71304.1| RE11278p [Drosophila melanogaster]
255.0 [0..1] [538..1]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLHFYSNH AGRLVLGGGN RRPTDVLCYP LESIKEFEQI SEAWKRLLAE LLKKEEDDSQ  60
   61 IFVKFFRFHK CYDLIPTSAK LVVFDTQLLV KKAFYALVYN GVRAAPLWDS EKQQFVGMLT 120
  121 ITDFIKILQM YYKSPN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.09691
Match: 2v8qE
Description: No description for 2v8qE was found.

Predicted Domain #2
Region A:
Residues: [137-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASMEQLEEHK LDTWRSVLHN QVMPLVSIGP DASLYDAIKI LIHSRIHRLP VIDPATGNVL  60
   61 YILTHKRILR FLFLYINELP KPAYMQKS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.62
Match: 2uv6A
Description: No description for 2uv6A was found.

Predicted Domain #3
Region A:
Residues: [225-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRELKIGTYN NIETADETTS IITALKKFVE RRVSALPLVD SDGRLVDIYA KFDVINLAAE  60
   61 KTYNDLDVSL RKANEHRNEW FEGVQKCNLD ESLYTIMERI VRAEVHRLVV VDENRKVIGI 120
  121 IS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 2uv4A
Description: No description for 2uv4A was found.

Predicted Domain #4
Region A:
Residues: [347-538]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDILLYLVL RPSGEGVGGS ESSLRASDPV LLRKVAEVEI PATAAAATTT TPPRSPSAGS  60
   61 GNRSLIEDIP EEETAPARSD DADSDNNKSA SEDKANNNQH DQTTTAATAN GDSNNSPVEV 120
  121 SFADEAQEEE AADQVERSNC DDDDQPALAE IERKNASMDD DEDDGMSSAV SAASALGQSL 180
  181 TPAAQEMALV SE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 1eepA
Description: Inosine monophosphate dehydrogenase (IMPDH)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle