| Protein: | sm-PG, FBpp03009... |
| Organism: | Drosophila melanogaster |
| Length: | 260 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sm-PG, FBpp03009....
| Description | E-value | Query Range |
Subject Range |
|
|
179.0 | [0..9] | [249..174] |
|
Region A: Residues: [1-260] |
1 11 21 31 41 51
| | | | | |
1 MKEPAGVVPG RNAPVAFTPQ GQAQGAVMMV YGLDHDTSNT DKLFNLVCLY GNVARIKFLK 60
61 TKEGTAMVQM GDAVAVERCV QHLNNIPVGT GGKIQIAFSK QNFLSEVINP FLLPDHSPSF 120
121 KEYTGSKNNR FLSPAQASKN RIQPPSKILH FFNTPPGLTE DQLIGIFNIK DVPATSVRLF 180
181 PLKTERSSSG LIEFSNISQA VLAIMKCNHL PIEGKGTKFP FIMKLCFSSS KSMNGAWNNA 240
241 ASEGMIEKEN EVDTKVDIYN
|
| Detection Method: |  |
| Confidence: | 32.69897 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| 2.83802439076672 | bayes_pls_golite062009 | |
| poly-pyrimidine tract binding | 1.69629099229571 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| snRNA binding | 0.249682711188639 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
