| Protein: | Dscam-PAU |
| Organism: | Drosophila melanogaster |
| Length: | 2018 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAU.
| Description | E-value | Query Range |
Subject Range |
|
|
1546.0 | [0..3] | [2018..3] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVI
|
| Detection Method: |  |
| Confidence: | 76.0 |
| Match: | 2v5rA |
| Description: | No description for 2v5rA was found. |
|
Region A: Residues: [139-819] |
1 11 21 31 41 51
| | | | | |
1 QSYESEADNE YVIRGNSVVM KCEIPSYVAD FVFVDLWLDS EGRNYYPNNA AETDGKYLVL 60
61 PSGELHIREV GPEDGYKSYQ CRTKHRLTGE TRLSATKGRL VITEPISAKA PVLAVDTKWS 120
121 GIERHRDMDI VLLCPAQAYP VPISRWYKFI EGTTRKQAVV LNDRVKQVSG TLIIKDAVVE 180
181 DSGKYLCVVN NSVGGESVET VLTVTAPLSA KIDPPTQTVD FGRPAVFTCQ YTGNPIKTVS 240
241 WMKDGKAIGH SEPVLRIESV KKEDKGMYQC FVRNDQESAE ASAELKLGGR FDPPVIRQAF 300
301 QEETMEPGPS VFLKCVAGGN PTPEISWELD GKKIANNDRY QVGQYVTVNG DVVSYLNITS 360
361 VHANDGGLYK CIAKSKVGVA EHSAKLNVYG LPYIRQMEKK AIVAGETLIV TCPVAGYPID 420
421 SIVWERDNRA LPINRKQKVF PNGTLIIENV ERNSDQATYT CVAKNQEGYS ARGSLEVQVM 480
481 VLPQVVPFDF GEESINELDM VSASCTVNKG DLPVDIYWTK NGGRVYTNDG LIVTRNSQRL 540
541 SVLSIESVRA RHAGNYSCVA TNNAGAITQS AMLAVNVPPR WILEPTDKAF AQGSDAKVEC 600
601 KADGFPKPQV TWKKAVGDTP GEYKDLKKSD NIRVEEGTLH VDNIQKTNEG YYLCEAINGI 660
661 GSGLSAVIMI SVQAPPEFTE K
|
| Detection Method: | |
| Confidence: | 54.522879 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [820-897] |
1 11 21 31 41 51
| | | | | |
1 LRNQTARRGE PAVLQCEAKG EKPIGILWNM NNMRLDPKND NRYTIREEIL STGVMSSLSI 60
61 KRTERSDSAL FTCVATNA
|
| Detection Method: | |
| Confidence: | 38.154902 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [898-1006] |
1 11 21 31 41 51
| | | | | |
1 FGSDDASINM IVQEVPEMPY ALKVLDKSGR SVQLSWAQPY DGNSPLDRYI IEFKRSRASW 60
61 SEIDRVIVPG HTTEAQVQKL SPATTYNIRI VAENAIGTSQ SSEAVTIIT
|
| Detection Method: | |
| Confidence: | 6.02 |
| Match: | 1wfoA |
| Description: | The eighth FN3 domain of human sidekick-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| pattern binding | 0.193336192164784 | bayes_pls_golite062009 |
|
Region A: Residues: [1007-1111] |
1 11 21 31 41 51
| | | | | |
1 AEEAPSGKPQ NIKVEPVNQT TMRVTWKPPP RTEWNGEILG YYVGYKLSNT NSSYVFETIN 60
61 FITEEGKEHN LELQNLRVYT QYSVVIQAFN KIGAGPLSEE EKQFT
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1va9A |
| Description: | Solution structure of the second FNIII domain of DSCAML1 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1112-1213] |
1 11 21 31 41 51
| | | | | |
1 AEGTPSQPPS DTACTTLTSQ TIRVGWVSPP LESANGVIKT YKVVYAPSDE WYDETKRHYK 60
61 KTASSDTVLH GLKKYTNYTM QVLATTAGGD GVRSVPIHCQ TE
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 2dlhA |
| Description: | No description for 2dlhA was found. |
|
Region A: Residues: [1214-1708] |
1 11 21 31 41 51
| | | | | |
1 PDVPEAPTDV KALVMGNAAI LVSWRPPAQP NGIITQYTVY SKAEGAETET KTQKVPHYQM 60
61 SFEATELEKN KPYEFWVTAS TTIGEGQQSK SIVAMPSDQV PAKIASFDDT FTATFKEDAK 120
121 MPCLAVGAPQ PEITWKIKGV EFSANDRMRV LPDGSLLIKS VNRQDAGDYS CHAENSIAKD 180
181 SITHKLIVLA PPQSPHVTLS ATTTDALTVK LKPHEGDTAP LHGYTLHYKP EFGEWETSEV 240
241 SVDSQKHNIE GLLCGSRYQV YATGFNNIGA GEASDILNTR TKGQKPKLPE KPRFIEVSSN 300
301 SVSLHFKAWK DGGCPMSHFV VESKKRDQIE WNQISNNVKP DNNYVVLDLE PATWYNLRIT 360
361 AHNSAGFTVA EYDFATLTVT GGTIAPSRDL PELSAEDTIR IILSNLNLVV PVVAALLVII 420
421 IAIIVICILR SKGNHHKDDV VYNQTMGPGA TLDKRRPDLR DELGYIAPPN RKLPPVPGSN 480
481 YNTCDRIKRG RGGLR
|
| Detection Method: | |
| Confidence: | 26.045757 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1709-1772] |
1 11 21 31 41 51
| | | | | |
1 SNHSTWDPRR NPNLYEELKA PPVPMHGNHY GHAHGNAECH YRHPGMEDEI CPYATFHLLG 60
61 FREE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1773-2018] |
1 11 21 31 41 51
| | | | | |
1 MDPTKAMNFQ TFPHQNGHAG PVPGHAGTML PPGHPGHVHS RSGSQSMPRA NRYQRKNSQG 60
61 GQSSIYTPAP EYDDPANCAE EDQYRRYTRV NSQGGSLYSG PGPEYDDPAN CAPEEDQYGS 120
121 QYGGPYGQPY DHYGSRGSMG RRSIGSARNP GNGSPEPPPP PPRNHDMSNS SFNDSKESNE 180
181 ISEAECDRDH GPRGNYGAVK RSPQPKDQRT TEEMRKLIER NETGPKQLQL QQANGAGFTA 240
241 YDTMAV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
