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View Structure Prediction Details

Protein: gi|108707614
Organism: Oryza sativa Japonica Group
Length: 663 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108707614.

Description E-value Query
Range
Subject
Range
DJC10_PONAB - DnaJ homolog subfamily C member 10 OS=Pongo abelii GN=DNAJC10 PE=2 SV=1
DJC10_PONPY - DnaJ homolog subfamily C member 10 precursor - Pongo pygmaeus (Orangutan)
291.0 [0..5] [652..11]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPVRSLLV ASIVLSSIAL HVAAAKNLDP YKVLGVDKSA SQRDIQKAFH KLSLKYHPDK  60
   61 NKSKGAQEKF AEINNAYDIL SDEEKRKNYD LYGDEKGNPG FGGGNFGNRE G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 2cugA
Description: Solution structure of the J domain of the pseudo DnaJ protein, mouse hypothetical mKIAA0962
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [112-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTYFTGGGAK TSHFSSGDGW QTMGGQGNTK TFSFSFGGGN PGAGGGNPFN FDFGDVFSNI  60
   61 FSGGSM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.09691
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [178-663]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGSQHTGSAG KARRGTKSSG HDSSSVNIQE VTMQIFNKET ADQGITWLLL FYTPNTKGQF  60
   61 VLESVVEDVA RSLDGALRAG KVNCDHEKAL CKKAGVSIGK SARLFIYSYT TTEKGSLHEY 120
  121 SGDYDSKSLK TFCQEHLPRF SKRVDINQFS FPSNIIPNLP QVLLLSAKKD TPAMWRAVSG 180
  181 MFRSRLIFYD AEVQDVSHPL LKSLGVKNIP ALIGRSVNGE EQLLKDGISV KDLRSGIKEL 240
  241 KNLLENFEKK NKKLASNQAK KPAHTDQPKE NKIPLLTASN FEEICGEKTS VCILGIFKSS 300
  301 KAKENLEAVL SEISQKTLIR GQNYNSGNAV AYALLDGNKQ SAFLSTFDKS AFKSSDKLLL 360
  361 AYKPRRGRYA VYDNEVTMEE AESLPVTEYM LLVRNRTLVE SLLLQQAGLC RLLAHTFGPA 420
  421 QRVVGSKHSS PGPDLRMASR SLSPLSSASK LCSRCGQADE PKMAATTFSS SPSKVTTAKF 480
  481 VTGLRA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.522879
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle