YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|108707573
Organism: Oryza sativa Japonica Group
Length: 755 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108707573.

Description E-value Query
Range
Subject
Range
gi|34897354, gi|... - gi|34897354|ref|NP_910023.1| hypothetical protein [Oryza sativa], gi|15042816|gb|AAK82439.1|AC091247...
583.0 [0..1] [755..1]

Back

Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQISLGHRY KECRPRRNNS PTKILVGKDL LKELEHRRSS PSVIAKLMGI DVLPPAYVTH  60
   61 NRHQDFKDVF EVSEEPQEAI VKERSHHFPK GLPSLKRSAL KLKKLMPSMS PYGDGPFDNN 120
  121 VVCRDGFDRL NSLEINNPLF EK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [143-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPHDMNYSAK HQYEKETSST FRKYPAGLGN TSLKDIRNSS RGKLEDFNSI VVLEPGLGKV  60
   61 QESGKAFCTP DPSHINKNFR REMQQADFSL QNRGRVSPNL LDTEDVDVSR IKRERYLSRN 120
  121 AVDSLLEGKE SSFDHHNVPD TSSSGSSQNC VSGEVNSRQS NRPSSNSSPR KNRQKYEEGS 180
  181 VGSKTLAEMF ALSDSERLKR DSDSHAQIRH NKLNRGNSNG K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [364-590]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGCFIVLPKH APRLHPHSSL DKNSPHSNFI PNTSNTYHSG QSHFNSFCDI SRLQQIGSPS  60
   61 QDNLRNACAK HQTLRQHRSA SPSHDNRNHS RCSTDNFSTF DCINEKILFT TDEDLVKKPA 120
  121 ETVHSSFESC GEEKVSASPF NCRDYESITV SDHSYVAKSH KSLKEVGQPS PVSILEPPTD 180
  181 EDSCCSGYFK CNLQDMPNVE KLIDDCELRY EQVSLSSDDD SGSSYRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [591-755]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEAFQVEEER GFSYLLDMLI NSGMIVADSQ LLCKSWHSPG CPVGPQVFDR LERKYNKISA  60
   61 WPRPERRLLF DLANTVLSEI LAPWKSSRRC CPVWGPEGPV EVVWQTMVRR QEELAVGHPD 120
  121 DKVLDPEWLE VGEDINTVGK QIAKMLHGDL LDEIILEFLS GCVAS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle