YRC Public Data Repository - Protein Structure Prediction

Protein:	SLC35E1
Organism:	Homo sapiens
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLC35E1.

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	1.0E-56	[1..266]	[424..689]
gi\|73986253 - gi\|73986253\|ref\|XP_541964.2\| PREDICTED: similar to solute carrier family 35, member E1 [Canis famili...	1.0E-49	[1..266]	[145..410]
gi\|76621180 - gi\|76621180\|ref\|XP_613288.2\| PREDICTED: similar to solute carrier family 35, member E1 [Bos taurus]	4.0E-48	[1..266]	[147..412]
gi\|149036180, gi... - gi\|149036180\|gb\|EDL90846.1\| similar to hypothetical protein 6030458H05 (predicted) [Rattus norvegicu...	7.0E-47	[1..266]	[1..265]
SL35E_MOUSE, S35... - (Q8CD26) Solute carrier family 35 member E1, Solute carrier family 35 member E1 - Mus musculus (Mous...	1.0E-46	[1..266]	[1..265]
gi\|22761388 - gi\|22761388\|dbj\|BAC11565.1\| unnamed protein product [Homo sapiens]	2.0E-41	[44..266]	[1..223]
gi\|47085801, gi\|... - gi\|68368559\|ref\|XP_702624.1\| PREDICTED: hypothetical protein XP_697532 [Danio rerio], gi\|47085801\|re...	3.0E-40	[1..266]	[115..375]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	3.0E-39	[1..266]	[123..385]
gi\|50415160, gi\|... - gi\|50415160\|gb\|AAH77379.1\| MGC81612 protein [Xenopus laevis], gi\|147902010\|ref\|NP_001086741.1\| MGC81...	1.0E-38	[1..266]	[1..263]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIWVVLLSR IIMKEKQSTK VYLSLIPIIS GVLLATVTEL SFDMWGLVSA LAATLCFSLQ  60
   61 NIFSKKVLRD SRIHHLRLLN ILGCHAVFFM IPTWVLVD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSAFLVSSDL TYVYQWPWTL LLLAVSGFCN FAQNVIAFSI LNLVSPLSYS VANATKRIMV  60
   61 ITVSLIMLRN PVTSTNVLGM MTAILGVFLY NKTKYDANQQ ARKHLLPVTT ADLSSKERHR 120
  121 SPLEKPHNGL LFPQHGDYQY GRNNILTDHF QYSRQSYPNS YSLNRYDV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.2
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits