YRC Public Data Repository - Protein Structure Prediction

Protein:	SLC35E1
Organism:	Homo sapiens
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLC35E1.

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	1.0E-56	[1..266]	[424..689]
gi\|73986253 - gi\|73986253\|ref\|XP_541964.2\| PREDICTED: similar to solute carrier family 35, member E1 [Canis famili...	1.0E-49	[1..266]	[145..410]
gi\|76621180 - gi\|76621180\|ref\|XP_613288.2\| PREDICTED: similar to solute carrier family 35, member E1 [Bos taurus]	4.0E-48	[1..266]	[147..412]
gi\|149036180, gi... - gi\|149036180\|gb\|EDL90846.1\| similar to hypothetical protein 6030458H05 (predicted) [Rattus norvegicu...	7.0E-47	[1..266]	[1..265]
SL35E_MOUSE, S35... - (Q8CD26) Solute carrier family 35 member E1, Solute carrier family 35 member E1 - Mus musculus (Mous...	1.0E-46	[1..266]	[1..265]
gi\|22761388 - gi\|22761388\|dbj\|BAC11565.1\| unnamed protein product [Homo sapiens]	2.0E-41	[44..266]	[1..223]
gi\|47085801, gi\|... - gi\|68368559\|ref\|XP_702624.1\| PREDICTED: hypothetical protein XP_697532 [Danio rerio], gi\|47085801\|re...	3.0E-40	[1..266]	[115..375]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	3.0E-39	[1..266]	[123..385]
gi\|50415160, gi\|... - gi\|50415160\|gb\|AAH77379.1\| MGC81612 protein [Xenopus laevis], gi\|147902010\|ref\|NP_001086741.1\| MGC81...	1.0E-38	[1..266]	[1..263]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIWVVLLSR IIMKEKQSTK VYLSLIPIIS GVLLATVTEL SFDMWGLVSA LAATLCFSLQ  60
   61 NIFSKKVLRD SRIHHLRLLN ILGCHAVFFM IPTWVLVD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSAFLVSSDL TYVYQWPWTL LLLAVSGFCN FAQNVIAFSI LNLVSPLSYS VANATKRIMV  60
   61 ITVSLIMLRN PVTSTNVLGM MTAILGVFLY NKTKYDANQQ ARKHLLPVTT ADLSSKERHR 120
  121 SPLEKPHNGL LFPQHGDYQY GRNNILTDHF QYSRQSYPNS YSLNRYDV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.2
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits