YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12653925, gi\|...
Organism:	Homo sapiens
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12653925, gi|....

Description	E-value	Query Range	Subject Range
gi\|114675329, gi... - gi\|55648223\|ref\|XP_512362.1\| PREDICTED: mitochondrial ribosomal protein L4 isoform 6 [Pan troglodyte...	2.0E-88	[1..263]	[1..263]
MRPL4 - mitochondrial ribosomal protein L4	2.0E-79	[1..247]	[1..247]
gi\|109484239, gi... - ref\|XP_343355.1\| similar to mitochondrial ribosomal protein L4 isoform a [Rattus norvegicus], gi\|157...	5.0E-78	[1..247]	[1..247]
gi\|55715752 - gb\|AAH86149.1\| Unknown (protein for MGC:98570) [Xenopus laevis] RM04_MOUSE - 39S ribosomal protein L4, mitochondrial OS=Mus musculus GN=Mrpl4 PE=1 SV=1	5.0E-76	[1..247]	[1..247]
RM04_BOVIN - 39S ribosomal protein L4, mitochondrial OS=Bos taurus GN=MRPL4 PE=1 SV=1	3.0E-72	[1..247]	[1..247]
RL4_GEOSE - 50S ribosomal protein L4 OS=Geobacillus stearothermophilus GN=rplD PE=1 SV=1	1.0E-67	[66..247]	[3..180]
RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus (strain HTA426) GN=rplD PE=3 SV=1 gi\|220706749, gi... - gi\|221089323\|ref\|ZP_03558843.1\| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61], gi\|220706749\|gb... RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus GN=rplD PE=3 SV=1	4.0E-67	[66..247]	[3..180]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFVRAGAR AWLRPTGSQG LSSLAEEAAR ATENPEQVAS EGLPEPVLRK VELPVPTHRR  60
   61 PVQAWVESLR GFEQERVGLA DLHPDVFATA PRLDILH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVAMWQKNFK RISYAKTKTR AEVRGGGRKP WPQKGTGRAR HGSIRSPLWR GGGVAHGPRG  60
   61 PTSYYYMLPM KVRALGLKVA LTVKLAQDDL HIMDSLELPT GDPQYLTELA HYRRWGDSVL 120
  121 LVDLTHEEMP QSIVEATSRL KTFNLIPAVG EQRAQAPRVR MCRLRC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	2ftcD
Description:	No description for 2ftcD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits