YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12653925, gi\|...
Organism:	Homo sapiens
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12653925, gi|....

Description	E-value	Query Range	Subject Range
gi\|114675329, gi... - gi\|55648223\|ref\|XP_512362.1\| PREDICTED: mitochondrial ribosomal protein L4 isoform 6 [Pan troglodyte...	2.0E-88	[1..263]	[1..263]
MRPL4 - mitochondrial ribosomal protein L4	2.0E-79	[1..247]	[1..247]
gi\|109484239, gi... - ref\|XP_343355.1\| similar to mitochondrial ribosomal protein L4 isoform a [Rattus norvegicus], gi\|157...	5.0E-78	[1..247]	[1..247]
gi\|55715752 - gb\|AAH86149.1\| Unknown (protein for MGC:98570) [Xenopus laevis] RM04_MOUSE - 39S ribosomal protein L4, mitochondrial OS=Mus musculus GN=Mrpl4 PE=1 SV=1	5.0E-76	[1..247]	[1..247]
RM04_BOVIN - 39S ribosomal protein L4, mitochondrial OS=Bos taurus GN=MRPL4 PE=1 SV=1	3.0E-72	[1..247]	[1..247]
RL4_GEOSE - 50S ribosomal protein L4 OS=Geobacillus stearothermophilus GN=rplD PE=1 SV=1	1.0E-67	[66..247]	[3..180]
RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus (strain HTA426) GN=rplD PE=3 SV=1 gi\|220706749, gi... - gi\|221089323\|ref\|ZP_03558843.1\| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61], gi\|220706749\|gb... RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus GN=rplD PE=3 SV=1	4.0E-67	[66..247]	[3..180]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFVRAGAR AWLRPTGSQG LSSLAEEAAR ATENPEQVAS EGLPEPVLRK VELPVPTHRR  60
   61 PVQAWVESLR GFEQERVGLA DLHPDVFATA PRLDILH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVAMWQKNFK RISYAKTKTR AEVRGGGRKP WPQKGTGRAR HGSIRSPLWR GGGVAHGPRG  60
   61 PTSYYYMLPM KVRALGLKVA LTVKLAQDDL HIMDSLELPT GDPQYLTELA HYRRWGDSVL 120
  121 LVDLTHEEMP QSIVEATSRL KTFNLIPAVG EQRAQAPRVR MCRLRC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	2ftcD
Description:	No description for 2ftcD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits