| Protein: | VPS16 |
| Organism: | Homo sapiens |
| Length: | 839 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS16.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..839] | [1..839] |
|
|
0.0 | [1..839] | [1..839] |
|
|
0.0 | [1..839] | [1..839] |
|
|
0.0 | [1..839] | [1..839] |
|
|
0.0 | [1..839] | [1..839] |
|
|
0.0 | [5..839] | [6..827] |
|
Region A: Residues: [1-611] |
1 11 21 31 41 51
| | | | | |
1 MDCYTANWNP LGDSAFYRKY ELYSMDWDLK EELRDCLVAA APYGGPIALL RNPWRKEKAA 60
61 SVRPVLDIYS ASGMPLASLL WKSGPVVSLG WSAEEELLCV QEDGAVLVYG LHGDFRRHFS 120
121 MGNEVLQNRV LDARIFHTEF GSGVAILTGA HRFTLSANVG DLKLRRMPEV PGLQSAPSCW 180
181 TVLCQDRVAH ILLAVGPDLY LLDHAACSAV TPPGLAPGVS SFLQMAVSFT YRHLALFTDT 240
241 GYIWMGTASL KEKLCEFNCN IRAPPKQMVW CSRPRSKERA VVVAWERRLM VVGDAPESIQ 300
301 FVLDEDSYLV PELDGVRIFS RSTHEFLHEV PAASEEIFKI ASMAPGALLL EAQKEYEKES 360
361 QKADEYLREI QELGQLTQAV QQCIEAAGHE HQPDMQKSLL RAASFGKCFL DRFPPDSFVH 420
421 MCQDLRVLNA VRDYHIGIPL TYSQYKQLTI QVLLDRLVLR RLYPLAIQIC EYLRLPEVQG 480
481 VSRILAHWAC YKVQQKDVSD EDVARAINQK LGDTPGVSYS DIAARAYGCG RTELAIKLLE 540
541 YEPRSGEQVP LLLKMKRSKL ALSKAIESGD TDLVFTVLLH LKNELNRGDF FMTLRNQPMA 600
601 LSLYRQFCKH Q
|
| Detection Method: |  |
| Confidence: | 3.15 |
| Match: | 1pguA |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 2.36802077000866 | bayes_pls_golite062009 |
| binding | 2.23598589443994 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.1136449999874 | bayes_pls_golite062009 |
| transporter activity | 1.23232041140488 | bayes_pls_golite062009 |
| protein binding | 1.16796757764458 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.750051725890322 | bayes_pls_golite062009 |
| actin filament binding | 0.680577261614999 | bayes_pls_golite062009 |
| hydrolase activity | 0.346903609858078 | bayes_pls_golite062009 |
| tubulin binding | 0.291956397524181 | bayes_pls_golite062009 |
| microtubule binding | 0.213830210314093 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0245411309982146 | bayes_pls_golite062009 |
|
Region A: Residues: [612-689] |
1 11 21 31 41 51
| | | | | |
1 ELETLKDLYN QDDNHQELGS FHIRASYAAE ERIEGRVAAL QTAADAFYKA KNEFAAKATE 60
61 DQMRLLRLQR RLEDELGG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [690-839] |
1 11 21 31 41 51
| | | | | |
1 QFLDLSLHDT VTTLILGGHN KRAEQLARDF RIPDKRLWWL KLTALADLED WEELEKFSKS 60
61 KKSPIGYLPF VEICMKQHNK YEAKKYASRV GPEQKVKALL LVGDVAQAAD VAIEHRNEAE 120
121 LSLVLSHCTG ATDGATADKI QRARAQAQKK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
