YRC Public Data Repository - Protein Structure Prediction

Protein:	NOL10
Organism:	Homo sapiens
Length:	688 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOL10.

Description	E-value	Query Range	Subject Range
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	3.0E-82	[3..359]	[786..1120]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	4.0E-82	[3..395]	[974..1343]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	7.0E-79	[2..355]	[1122..1453]
gi\|23128312, gi\|... - gi\|23128312\|ref\|ZP_00110163.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668169...	1.0E-77	[3..372]	[858..1206]
gi\|169776724 - gi\|169776724\|ref\|XP_001822828.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771564 - gi\|83771564\|dbj\|BAE61695.1\| unnamed protein product [Aspergillus oryzae]	3.0E-77	[3..350]	[44..369]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	6.0E-77	[3..356]	[1128..1459]

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Predicted Domain #1

Region A:
Residues: [1-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVSSLNEVK IYSLSCGKSL PEWLSDRKKR ALQKKDVDVR RRIELIQDFE MPTVCTTIKV  60
   61 SKDGQYILAT GTYKPRVRCY DTYQLSLKFE RCLDSEVVTF EILSDDYSKI VFLHNDRYIE 120
  121 FHSQSGFYYK TRIPKFGRDF SYHYPSCDLY FVGASSEVYR LNLEQGRYLN PLQTDAAENN 180
  181 VCDINSVHGL FATGTIEGRV ECWDPRTRNR VGLLDCALNS VTADSEINSL PTISALKFNG 240
  241 ALTMAVGTTT GQVLLYDLRS DKPLLVKDHQ YGLPIKSVHF QDSLDLILSA DSRIVKMWNK 300
  301 NSGKIFTSLE PEHDLNDVCL YPNSGMLLTA NETPKMGIYY IPVLGPAPRW CSFLDNLTEE 360
  361 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.221849
Match:	2g9aA
Description:	No description for 2g9aA was found.

Predicted Domain #2

Region A:
Residues: [362-688]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EENPESTVYD DYKFVTKKDL ENLGLTHLIG SPFLRAYMHG FFMDIRLYHK VKLMVNPFAY  60
   61 EEYRKDKIRQ KIEETRAQRV QLKKLPKVNK ELALKLIEEE EEKQKSTWKK KVKSLPNILT 120
  121 DDRFKVMFEN PDFQVDEESE EFRLLNPLVS KISEKRKKKL RLLEQQELRE KEEEEEPEGK 180
  181 PSDAESSESS DDEKAWVEEV RKQRRLLQQE EKVKRQERLK EDQQTVLKPQ FYEIKAGEEF 240
  241 RSFKDSATKQ KLMNKTLEDR LKIEAKNGTL SVSDTTVGSK QLTFTLKRSE QQKKQQEAEK 300
  301 LHRQERKRLR RSAGHLKSRH KRGRSFH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits