YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16307090, gi\|...
Organism:	Homo sapiens
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16307090, gi|....

Description	E-value	Query Range	Subject Range
gi\|109079755 - gi\|109079755\|ref\|XP_001095288.1\| PREDICTED: similar to nucleophosmin 1 isoform 2 [Macaca mulatta]	388.0	[0..1]	[265..130]
gi\|94386888, gi\|... - gi\|94386888\|ref\|XP_979585.1\| PREDICTED: similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23...	373.0	[0..1]	[265..1]
gi\|197101984 - gi\|197101984\|ref\|NP_001125077.1\| nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Pongo abeli... gi\|55726890 - gi\|55726890\|emb\|CAH90204.1\| hypothetical protein [Pongo abelii]	371.0	[0..1]	[265..1]
NPM_RAT - Nucleophosmin OS=Rattus norvegicus GN=Npm1 PE=1 SV=1	368.0	[0..1]	[265..1]
NPM_BOVIN - Nucleophosmin OS=Bos taurus GN=NPM1 PE=2 SV=1	365.0	[0..1]	[265..1]
gi\|73949577 - gi\|73949577\|ref\|XP_849946.1\| PREDICTED: similar to nucleophosmin 1 isoform 1 [Canis familiaris]	363.0	[0..1]	[265..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSMDMDMS PLRPQNYLFG CELKADKDYH FKVDNDENEH QLSLRTVSLG AGAKDELHIV  60
   61 EAEAMNYEGS PIKVTLATLK MSVQPTVSLG GFEITPPVVL RLKCGSGPVH ISGQHLVAVE 120
  121 EDAESEDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.522879
Match:	2p1bA
Description:	No description for 2p1bA was found.

Predicted Domain #2

Region A:
Residues: [129-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEEDVKLLSI SGKRSAPGGG SKVPQKKVKL AADEDDDDDD EEDDDEDDDD DDFDDEEAEE  60
   61 KAPVKKGQES FKKQEKTPKT PKGPSSVEDI KAKMQASIEK GGSLPKVEAK FINYVKNCFR 120
  121 MTDQEAIQDL WQWRKSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits