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View Structure Prediction Details

Protein: NPM1
Organism: Homo sapiens
Length: 294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPM1.

Description E-value Query
Range
Subject
Range
gi|197101984 - gi|197101984|ref|NP_001125077.1| nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Pongo abeli...
gi|55726890 - gi|55726890|emb|CAH90204.1| hypothetical protein [Pongo abelii]
0.0 [1..294] [1..295]
gi|30584325, gi|... - gi|60653673|gb|AAX29530.1| nucleophosmin [synthetic construct], gi|30584325|gb|AAP36411.1| Homo sapi...
0.0 [1..294] [1..294]
gi|16876992 - gi|16876992|gb|AAH16768.1| Nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Homo sapiens]
0.0 [1..294] [1..294]
gi|94386888, gi|... - gi|94386888|ref|XP_979585.1| PREDICTED: similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23...
0.0 [1..294] [1..284]
gi|109079755 - gi|109079755|ref|XP_001095288.1| PREDICTED: similar to nucleophosmin 1 isoform 2 [Macaca mulatta]
0.0 [1..294] [130..394]
NPM_RAT - Nucleophosmin OS=Rattus norvegicus GN=Npm1 PE=1 SV=1
0.0 [1..294] [1..292]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSMDMDMS PLRPQNYLFG CELKADKDYH FKVDNDENEH QLSLRTVSLG AGAKDELHIV  60
   61 EAEAMNYEGS PIKVTLATLK MSVQPTVSLG GFEITPPVVL RLKCGSGPVH ISGQHLVAVE 120
  121 ED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.39794
Match: 2p1bA
Description: No description for 2p1bA was found.

Predicted Domain #2
Region A:
Residues: [123-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AESEDEEEED VKLLSISGKR SAPGGGSKVP QKKVKLAADE DDDDDDEEDD DEDDDDDDFD  60
   61 DEEAEEKAPV KKSIRDTPAK NAQKSN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [209-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNGKDSKPSS TPRSKGQESF KKQEKTPKTP KGPSSVEDIK AKMQASIEKG GSLPKVEAKF  60
   61 INYVKNCFRM TDQEAIQDLW QWRKSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle