YRC Public Data Repository - Protein Structure Prediction

Protein:	GALNT2
Organism:	Homo sapiens
Length:	571 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GALNT2.

Description	E-value	Query Range	Subject Range
gi\|109020037 - gi\|109020037\|ref\|XP_001107497.1\| PREDICTED: similar to polypeptide N-acetylgalactosaminyltransferase...	0.0	[1..571]	[1..571]
GALT2_MOUSE - Polypeptide N-acetylgalactosaminyltransferase 2 OS=Mus musculus GN=Galnt2 PE=1 SV=1	0.0	[1..571]	[1..570]
gi\|114573105 - gi\|114573105\|ref\|XP_001147419.1\| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 2 isoform ...	0.0	[1..571]	[1..576]
gi\|73961264 - gi\|73961264\|ref\|XP_537284.2\| PREDICTED: similar to polypeptide N-acetylgalactosaminyltransferase 1 i...	0.0	[1..567]	[1..552]
GALNT1 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) gi\|109121961 - gi\|109121961\|ref\|XP_001105040.1\| PREDICTED: similar to polypeptide N-acetylgalactosaminyltransferase... gi\|55647329 - gi\|55647329\|ref\|XP_523910.1\| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 1 isoform 4 [P...	0.0	[1..567]	[1..552]
GALT1_PIG - Polypeptide N-acetylgalactosaminyltransferase 1 OS=Sus scrofa GN=GALNT1 PE=2 SV=1 gi\|1339955 - gi\|1339955\|dbj\|BAA12800.1\| N-acetylgalactosaminyl transferase [Sus sp.]	0.0	[1..567]	[1..552]

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Predicted Domain #1

Region A:
Residues: [1-571]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRSRMLLC FAFLWVLGIA YYMYSGGGSA LAGGAGGGAG RKEDWNEIDP IKKKDLHHSN  60
   61 GEEKAQSMET LPPGKVRWPD FNQEAYVGGT MVRSGQDPYA RNKFNQVESD KLRMDRAIPD 120
  121 TRHDQCQRKQ WRVDLPATSV VITFHNEARS ALLRTVVSVL KKSPPHLIKE IILVDDYSND 180
  181 PEDGALLGKI EKVRVLRNDR REGLMRSRVR GADAAQAKVL TFLDSHCECN EHWLEPLLER 240
  241 VAEDRTRVVS PIIDVINMDN FQYVGASADL KGGFDWNLVF KWDYMTPEQR RSRQGNPVAP 300
  301 IKTPMIAGGL FVMDKFYFEE LGKYDMMMDV WGGENLEISF RVWQCGGSLE IIPCSRVGHV 360
  361 FRKQHPYTFP GGSGTVFARN TRRAAEVWMD EYKNFYYAAV PSARNVPYGN IQSRLELRKK 420
  421 LSCKPFKWYL ENVYPELRVP DHQDIAFGAL QQGTNCLDTL GHFADGVVGV YECHNAGGNQ 480
  481 EWALTKEKSV KHMDLCLTVV DRAPGSLIKL QGCRENDSRQ KWEQIEGNSK LRHVGSNLCL 540
  541 DSRTAKSGGL SVEVCGPALS QQWKFTLNLQ Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.69897
Match:	2ffuA
Description:	Crystal Structure of Human ppGalNAcT-2 complexed with UDP and EA2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits