YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3882309
Organism:	Homo sapiens
Length:	490 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3882309.

Description	E-value	Query Range	Subject Range
gi\|55725779 - gi\|55725779\|emb\|CAH89670.1\| hypothetical protein [Pongo abelii] gi\|55725779\|emb\|... - hypothetical protein [Pongo pygmaeus]	4.0E-93	[2..490]	[1..489]
gi\|74002808 - gi\|74002808\|ref\|XP_545151.2\| PREDICTED: similar to CG8892-PA, isoform A isoform 1 [Canis familiaris]	9.0E-93	[2..490]	[1..489]
UBXN7 - UBX domain protein 7 gi\|114591257 - gi\|114591257\|ref\|XP_516973.2\| PREDICTED: UBX domain containing 7 [Pan troglodytes] UBXN7_PONAB - UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2 gi\|182888327, gi... - gi\|182888327\|gb\|AAI60090.1\| UBX domain protein 7 [synthetic construct], gi\|168267588\|dbj\|BAG09850.1\|... UBXD7_PONPY - UBX domain-containing protein 7 - Pongo pygmaeus (Orangutan)	1.0E-92	[2..490]	[1..489]
gi\|74188735, gi\|... - gi\|74188735\|dbj\|BAE28100.1\| unnamed protein product [Mus musculus], gi\|226958595\|ref\|NP_808301.2\| UB...	2.0E-92	[2..490]	[1..489]
gi\|34869261, gi\|... - ref\|XP_221375.2\| similar to KIAA0794 protein [Rattus norvegicus], gi\|149060711\|gb\|EDM11425.1\| rCG526...	9.0E-89	[15..490]	[15..490]
gi\|50752130 - gi\|50752130\|ref\|XP_422667.1\| PREDICTED: similar to KIAA0794 protein [Gallus gallus]	1.0E-88	[1..490]	[850..1339]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMAAHGGSAA SSALKGLIQQ FTTITGASES VGKHMLEACN NNLEMAVTMF LDGGGIAEEP  60
   61 STSSASVSTV RPHTEEEVRA PIPQKQEILV EPEPLFGAPK RRRPARSIFD GFRDFQTETI 120
  121 RQEQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	2damA
Description:	No description for 2damA was found.

Predicted Domain #2

Region A:
Residues: [126-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRNGGAIDKK LTTLADLFRP PIDLMHKGSF ETAKECGQMQ NKWLMINIQN VQDFACQCLN  60
   61 RDVWSNEAVK NIIREHFIFW QVYHDSEEGQ RYIQFYKLGD FPYVSILDPR TGQKLVEWHQ 120
  121 LDVSSFLDQV TGFLGEHGQL DG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.154902
Match:	2dlxA
Description:	No description for 2dlxA was found.

Predicted Domain #3

Region A:
Residues: [268-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSSSPPKKCA RSESLIDASE DSQLEAAIRA SLQETHFDST QTKQDSRSDE ESESELFSGS  60
   61 EEFISVCGSD EEEEVENLAK SRKSPHKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [356-490]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGHRKEENRR PLTEPPVRTD PGTATNHQGL PAVDSEILEM PPEKADGVVE GIDVNGPKAQ  60
   61 LMLRYPDGKR EQITLPEQAK LLALVKHVQS KGYPNERFEL LTNFPRRKLS HLDYDITLQE 120
  121 AGLCPQETVF VQERN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1wj4A
Description:	Solution structure of the UBX domain of KIAA0794 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.506789500062807	bayes_pls_golite062009
protein binding	0.404947805207209	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: