YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3882309
Organism:	Homo sapiens
Length:	490 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3882309.

Description	E-value	Query Range	Subject Range
gi\|55725779 - gi\|55725779\|emb\|CAH89670.1\| hypothetical protein [Pongo abelii] gi\|55725779\|emb\|... - hypothetical protein [Pongo pygmaeus]	4.0E-93	[2..490]	[1..489]
gi\|74002808 - gi\|74002808\|ref\|XP_545151.2\| PREDICTED: similar to CG8892-PA, isoform A isoform 1 [Canis familiaris]	9.0E-93	[2..490]	[1..489]
UBXN7 - UBX domain protein 7 gi\|114591257 - gi\|114591257\|ref\|XP_516973.2\| PREDICTED: UBX domain containing 7 [Pan troglodytes] UBXN7_PONAB - UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2 gi\|182888327, gi... - gi\|182888327\|gb\|AAI60090.1\| UBX domain protein 7 [synthetic construct], gi\|168267588\|dbj\|BAG09850.1\|... UBXD7_PONPY - UBX domain-containing protein 7 - Pongo pygmaeus (Orangutan)	1.0E-92	[2..490]	[1..489]
gi\|74188735, gi\|... - gi\|74188735\|dbj\|BAE28100.1\| unnamed protein product [Mus musculus], gi\|226958595\|ref\|NP_808301.2\| UB...	2.0E-92	[2..490]	[1..489]
gi\|34869261, gi\|... - ref\|XP_221375.2\| similar to KIAA0794 protein [Rattus norvegicus], gi\|149060711\|gb\|EDM11425.1\| rCG526...	9.0E-89	[15..490]	[15..490]
gi\|50752130 - gi\|50752130\|ref\|XP_422667.1\| PREDICTED: similar to KIAA0794 protein [Gallus gallus]	1.0E-88	[1..490]	[850..1339]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMAAHGGSAA SSALKGLIQQ FTTITGASES VGKHMLEACN NNLEMAVTMF LDGGGIAEEP  60
   61 STSSASVSTV RPHTEEEVRA PIPQKQEILV EPEPLFGAPK RRRPARSIFD GFRDFQTETI 120
  121 RQEQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	2damA
Description:	No description for 2damA was found.

Predicted Domain #2

Region A:
Residues: [126-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRNGGAIDKK LTTLADLFRP PIDLMHKGSF ETAKECGQMQ NKWLMINIQN VQDFACQCLN  60
   61 RDVWSNEAVK NIIREHFIFW QVYHDSEEGQ RYIQFYKLGD FPYVSILDPR TGQKLVEWHQ 120
  121 LDVSSFLDQV TGFLGEHGQL DG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.154902
Match:	2dlxA
Description:	No description for 2dlxA was found.

Predicted Domain #3

Region A:
Residues: [268-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSSSPPKKCA RSESLIDASE DSQLEAAIRA SLQETHFDST QTKQDSRSDE ESESELFSGS  60
   61 EEFISVCGSD EEEEVENLAK SRKSPHKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [356-490]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGHRKEENRR PLTEPPVRTD PGTATNHQGL PAVDSEILEM PPEKADGVVE GIDVNGPKAQ  60
   61 LMLRYPDGKR EQITLPEQAK LLALVKHVQS KGYPNERFEL LTNFPRRKLS HLDYDITLQE 120
  121 AGLCPQETVF VQERN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1wj4A
Description:	Solution structure of the UBX domain of KIAA0794 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.506789500062807	bayes_pls_golite062009
protein binding	0.404947805207209	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: