YRC Public Data Repository - Protein Structure Prediction

Protein:	MAPK9
Organism:	Homo sapiens
Length:	424 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAPK9.

Description	E-value	Query Range	Subject Range
gi\|123994075, gi... - gi\|157928719\|gb\|ABW03645.1\| mitogen-activated protein kinase 9 [synthetic construct], gi\|123994075\|g... gi\|114603874 - gi\|114603874\|ref\|XP_001154685.1\| PREDICTED: mitogen-activated protein kinase 9 isoform 5 [Pan troglo... MAPK9 - mitogen-activated protein kinase 9 ENSOCUP00000013354 - pep:novel scaffold:oryCun2:GL018730:1709292:1751153:-1 gene:ENSOCUG00000015542 transcript:ENSOCUT000...	420.0	[0..1]	[424..1]
gi\|73970333 - gi\|73970333\|ref\|XP_856169.1\| PREDICTED: similar to mitogen-activated protein kinase 9 isoform 1 isof...	420.0	[0..1]	[424..1]
gi\|254750709, gi... - gi\|74203059\|dbj\|BAE26227.1\| unnamed protein product [Mus musculus], gi\|56205900\|emb\|CAI23942.1\| mito... gi\|117616458 - gi\|117616458\|gb\|ABK42247.1\| Jnk2 [synthetic construct] MK09_RAT - Mitogen-activated protein kinase 9 OS=Rattus norvegicus GN=Mapk9 PE=1 SV=1	411.0	[0..1]	[424..1]
gi\|46592833, gi\|... - gi\|46592833\|ref\|NP_997575.1\| mitogen activated protein kinase 9 isoform a [Mus musculus], gi\|2632776...	410.0	[0..1]	[424..1]
gi\|114603870 - gi\|114603870\|ref\|XP_001154624.1\| PREDICTED: similar to c-jun N-terminal kinase isoform 4 [Pan troglo... gi\|119574149 - gi\|119574149\|gb\|EAW53764.1\| mitogen-activated protein kinase 9, isoform CRA_f [Homo sapiens]	410.0	[0..1]	[424..1]

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Predicted Domain #1

Region A:
Residues: [1-424]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKCDSQF YSVQVADSTF TVLKRYQQLK PIGSGAQGIV CAAFDTVLGI SVAVKKLSRP  60
   61 FQNQTHAKRA YRELVLLKCV NHKNIISLLN VFTPQKTLEE FQDVYLVMEL MDANLCQVIH 120
  121 MELDHERMSY LLYQMLCGIK HLHSAGIIHR DLKPSNIVVK SDCTLKILDF GLARTACTNF 180
  181 MMTPYVVTRY YRAPEVILGM GYKENVDIWS VGCIMGELVK GCVIFQGTDH IDQWNKVIEQ 240
  241 LGTPSAEFMK KLQPTVRNYV ENRPKYPGIK FEELFPDWIF PSESERDKIK TSQARDLLSK 300
  301 MLVIDPDKRI SVDEALRHPY ITVWYDPAEA EAPPPQIYDA QLEEREHAIE EWKELIYKEV 360
  361 MDWEERSKNG VVKDQPSDAA VSSNATPSQS SSINDISSMS TEQTLASDTD SSLDASTGPL 420
  421 EGCR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	1jnkA
Description:	THE C-JUN N-TERMINAL KINASE (JNK3S) COMPLEXED WITH MGAMP-PNP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits