| Protein: | VPS72 |
| Organism: | Homo sapiens |
| Length: | 364 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS72.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-96 | [1..364] | [1..364] |
|
|
2.0E-96 | [1..364] | [1..364] |
|
|
6.0E-96 | [1..364] | [1..364] |
|
|
7.0E-96 | [1..364] | [1..364] |
|
|
7.0E-96 | [1..364] | [1..364] |
|
|
6.0E-95 | [1..364] | [1..364] |
|
|
2.0E-93 | [1..364] | [1..364] |
|
|
7.0E-92 | [1..364] | [1..368] |
|
Region A: Residues: [1-244] |
1 11 21 31 41 51
| | | | | |
1 MSLAGGRAPR KTAGNRLSGL LEAEEEDEFY QTTYGGFTEE SGDDEYQGDQ SDTEDEVDSD 60
61 FDIDEGDEPS SDGEAEEPRR KRRVVTKAYK EPLKSLRPRK VNTPAGSSQK AREEKALLPL 120
121 ELQDDGSDSR KSMRQSTAEH TRQTFLRVQE RQGQSRRRKG PHCERPLTQE ELLREAKITE 180
181 ELNLRSLETY ERLEADKKKQ VHKKRKCPGP IITYHSVTVP LVGEPGPKEE NVDIEGLDPA 240
241 PSVS
|
| Detection Method: |  |
| Confidence: | 1.07 |
| Match: | 1rw6A |
| Description: | human APP core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.91859588671053 | bayes_pls_golite062009 |
| nucleic acid binding | 2.76287385741172 | bayes_pls_golite062009 |
| DNA binding | 2.7437155216718 | bayes_pls_golite062009 |
| protein binding | 1.72899821979103 | bayes_pls_golite062009 |
| identical protein binding | 0.715609885862042 | bayes_pls_golite062009 |
|
Region A: Residues: [245-364] |
1 11 21 31 41 51
| | | | | |
1 ALTPHAGTGP VNPPARCSRT FITFSDDATF EEWFPQGRPP KVPVREVCPV THRPALYRDP 60
61 VTDIPYATAR AFKIIREAYK KYITAHGLPP TASALGPGPP PPEPLPGSGP RALRQKIVIK 120
121
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.268 | 0.534 | chromatin modification | a.4.3 | ARID-like |
| View | Download | 0.300 | 0.043 | negative regulation of transcription from RNA polymerase II promoter | a.118.1 | ARM repeat |
| View | Download | 0.498 | 0.038 | negative regulation of transcription from RNA polymerase II promoter | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.242 | 0.003 | negative regulation of transcription from RNA polymerase II promoter | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.256 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
