YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14280321, gi\|...
Organism:	Homo sapiens
Length:	627 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14280321, gi|....

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	0.0	[76..622]	[1170..1709]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	0.0	[75..624]	[1041..1581]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	0.0	[18..624]	[866..1487]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	0.0	[77..624]	[565..1104]
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	0.0	[18..625]	[823..1445]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCVPRSGLIL SCICLYCGVL LPVLLPNLPF LTCLSMSTLE SVTYLPEKGL YCQRLPSSRT  60
   61 HGGTESLKGK NTENM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.511	a.4.10	N-terminal Zn binding domain of HIV integrase
View	Download	0.388	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.282	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.254	a.5.2	UBA-like
View	Download	0.248	a.5.2	UBA-like

Predicted Domain #2

Region A:
Residues: [76-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFYGTLKMIF YKMKRKLDHG SEVRSFSLGK KPCKVSEYTS TTGLVPCSAT PTTFGDLRAA  60
   61 NGQGQQRRRI TSVQPPTGLQ EWLKMFQSWS GPEKLLALDE LIDSCEPTQV KHMMQVIEPQ 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	2pm9A
Description:	No description for 2pm9A was found.

Predicted Domain #3

Region A:
Residues: [196-627]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQRDFISLLP KELALYVLSF LEPKDLLQAA QTCRYWRILA EDNLLWREKC KEEGIDEPLH  60
   61 IKRRKVIKPG FIHSPWKSAY IRQHRIDTNW RRGELKSPKV LKGHDDHVIT CLQFCGNRIV 120
  121 SGSDDNTLKV WSAVTGKCLR TLVGHTGGVW SSQMRDNIII SGSTDRTLKV WNAETGECIH 180
  181 TLYGHTSTVR CMHLHEKRVV SGSRDATLRV WDIETGQCLH VLMGHVAAVR CVQYDGRRVV 240
  241 SGAYDFMVKV WDPETETCLH TLQGHTNRVY SLQFDGIHVV SGSLDTSIRV WDVETGNCIH 300
  301 TLTGHQSLTS GMELKDNILV SGNADSTVKI WDIKTGQCLQ TLQGPNKHQS AVTCLQFNKN 360
  361 FVITSSDDGT VKLWDLKTGE FIRNLVTLES GGSGGVVWRI RASNTKLVCA VGSRNGTEET 420
  421 KLLVLDFDVD MK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.221849
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits