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View Structure Prediction Details

Protein: gi|115476380, gi...
Organism: Oryza sativa Japonica Group
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115476380, gi....

Description E-value Query
Range
Subject
Range
Y2104_ARATH - Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=2...
197.0 [0..21] [357..38]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSRCSAGSA VALCGGRGGH RLLSCAAARR RAPGASASAK GIPRSALRAS VTPEFVTAAP  60
   61 DEAVEESSVE REPAAENKLR KLACPICYYP LISSSDQSAP VSAASSSSLE CSTCKKFYPN 120
  121 RGDYWDMTVA VGSTEYSEST TVTTEVFRTP LVSFLYERGW RQNFIWSGF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGLEREFEMA QTYLKPTTGG IIVDASCGSG LFSRLFVKSE LYSLVVALDF SENMLKQCNE  60
   61 YVKQENISDK TLALARADIS RLPFVSGSID AVHAAAAIHC WPSPACAVAE ISRVLRPGGV 120
  121 FVASTFVADI LPPAVPVLRI GRPYISQFTG SNIFLSEAEF EDLCRACGLI DFKFVRNGFY 180
  181 IMFSATKAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.09691
Match: 1vl5A
Description: Crystal structure of hypothetical protein (BH2331) from Bacillus halodurans at 1.95 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle