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View Structure Prediction Details

Protein: gi|115476380, gi...
Organism: Oryza sativa Japonica Group
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115476380, gi....

Description E-value Query
Range
Subject
Range
Y2104_ARATH - Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=2...
197.0 [0..21] [357..38]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSRCSAGSA VALCGGRGGH RLLSCAAARR RAPGASASAK GIPRSALRAS VTPEFVTAAP  60
   61 DEAVEESSVE REPAAENKLR KLACPICYYP LISSSDQSAP VSAASSSSLE CSTCKKFYPN 120
  121 RGDYWDMTVA VGSTEYSEST TVTTEVFRTP LVSFLYERGW RQNFIWSGF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGLEREFEMA QTYLKPTTGG IIVDASCGSG LFSRLFVKSE LYSLVVALDF SENMLKQCNE  60
   61 YVKQENISDK TLALARADIS RLPFVSGSID AVHAAAAIHC WPSPACAVAE ISRVLRPGGV 120
  121 FVASTFVADI LPPAVPVLRI GRPYISQFTG SNIFLSEAEF EDLCRACGLI DFKFVRNGFY 180
  181 IMFSATKAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.09691
Match: 1vl5A
Description: Crystal structure of hypothetical protein (BH2331) from Bacillus halodurans at 1.95 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle