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View Structure Prediction Details

Protein: gi|113595505, gi...
Organism: Oryza sativa Japonica Group
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113595505, gi....

Description E-value Query
Range
Subject
Range
gi|162459283, gi... - gi|89212802|gb|ABD63903.1| CFM6 [Zea mays], gi|162459283|ref|NP_001105859.1| cfm6 protein [Zea mays]
308.0 [0..1] [348..1]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLAPCLLR RRPLRSAAAA ALVHPSGSWM RPRGAGSSPR PPGASPLFEP PRVVSERWMD  60
   61 GRGWWFRFRQ PVRHGSTAVT LDTGGGFARF SVGGDAGTKQ GAGRKGQPPA KAAKKKMSRK 120
  121 AKVNQLKWYR LKAKKKMKSP NPEVRIRYKL EKAKRKEEWL IEKLRKYEVP RSPEPVHDP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EILTEEEKFY LKRTGEKKKN YVPVGRRGVF GGVVLNMHLH WKKHETVKVI CKPCRPGQVY  60
   61 EYAEELTRLS KGTVIDIKPN NTIIFYRGKN YVQPKVMSPP DTLSKQKALE KYRYEQSLEH 120
  121 TSQFIEKLEK ELEDYQKHVA LFKNRGETLE TISSEETNVD DLTSSSDTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 1jo0A
Description: YhbY homologue HI1333
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle