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View Structure Prediction Details

Protein: gi|113595505, gi...
Organism: Oryza sativa Japonica Group
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113595505, gi....

Description E-value Query
Range
Subject
Range
gi|162459283, gi... - gi|89212802|gb|ABD63903.1| CFM6 [Zea mays], gi|162459283|ref|NP_001105859.1| cfm6 protein [Zea mays]
308.0 [0..1] [348..1]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLAPCLLR RRPLRSAAAA ALVHPSGSWM RPRGAGSSPR PPGASPLFEP PRVVSERWMD  60
   61 GRGWWFRFRQ PVRHGSTAVT LDTGGGFARF SVGGDAGTKQ GAGRKGQPPA KAAKKKMSRK 120
  121 AKVNQLKWYR LKAKKKMKSP NPEVRIRYKL EKAKRKEEWL IEKLRKYEVP RSPEPVHDP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EILTEEEKFY LKRTGEKKKN YVPVGRRGVF GGVVLNMHLH WKKHETVKVI CKPCRPGQVY  60
   61 EYAEELTRLS KGTVIDIKPN NTIIFYRGKN YVQPKVMSPP DTLSKQKALE KYRYEQSLEH 120
  121 TSQFIEKLEK ELEDYQKHVA LFKNRGETLE TISSEETNVD DLTSSSDTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 1jo0A
Description: YhbY homologue HI1333
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle