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View Structure Prediction Details

Protein: gi|113578967, gi...
Organism: Oryza sativa Japonica Group
Length: 1086 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|113578967, gi....

Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDASSDLGG ARPGAVERDI EQAITALKKG AYLLKYGRRG KPKFCPFRLS NDESILIWFS  60
   61 GKEEKQLRLS HVSRIIPGQR TAIFQRYPRP EKECQSFSLI SHDRSLDIIC KDKDEAEVWF 120
  121 AGLKTLITRS HQRKWRTESR SDMLSSGTTS PRTYTRRSSP LSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 1maiA
Description: STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM PHOSPHOLIPASE C DELTA IN COMPLEX WITH INOSITOL TRISPHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [164-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFSSNDSVHK DGVENYRLRS PFGSPPKVGL EKAFSDIVSY AAPPKPFFPS DSNAGSVHSV  60
   61 SSGQSDNTNL HSRGIPMDAF RV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-722]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSSAVSSSS HGSGHDDGDA LGDVFIWGEG TGEGILGGGN SRVGNSSGVN MDCLIPKPLE  60
   61 FAVKLDVQNI SCGGRHATLV TKQGEIYSWG EESGGRLGHG VDCDVPQPKL IDALANMNIE 120
  121 LVACGEYHTC AVTLSGDLYT WGNGTSNSGL LGHGNEVSHW VPKRVNGPLE GIHVSAISCG 180
  181 PWHTAIVTSA GQLFTFGDGS FGVLGHGDRQ SLSVPREVES LKGLRTVRAA CGVWHTAAVV 240
  241 EVMVGNSSSS NCSSGKIFTW GDGDKGRLGH GDKDTRLVPT CVAALVEPNF CQIACGHCMT 300
  301 VALTTSGHVY TMGSPVYGQL GNPQADGMLP VRVEGKLHKN FVEEISCGAY HVAVLTSRTE 360
  361 VYTWGKGANG RLGHGDTDDR SSPTLVEALK DKQVRTVVCG INFTAAICIH KWVSGVDQSM 420
  421 CSGCRLPFNL RRKRHNCYNC ALVFCHACSS KKSLKASLAP NPNKPYRVCD SCYSKLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.30103
Match: 1a12A
Description: Regulator of chromosome condensation RCC1
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [723-777]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGPETDRYSS AKRGSVIQGF NDSVDEELET KSNAQLSRLS SLESFKHMDS RTSKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [778-1086]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKKFEFNSSR VSPIPNGSSH WSGLNISKSF GSSKKFFSAS VPGSRIVSRA TSPVSRRASP  60
   61 PRSTTPTPTL GGLTSPRVVD GVKPNDSISQ EVLSLRSQVE NLTRKSQLLE ADLERTTKQL 120
  121 KEAISIAGEE TAKCKAAKEV IKSLTAQLKG MAEKLPEGAG LVKNSRLPPL PGISIPTDIS 180
  181 VASESLGSPR SSGEPCSNGS NGLLVSNGPT SVRNKLSHPE IPKNGTRLPD SDSKHESEWV 240
  241 EQDEPGVYIT LTALPGGTRD LKRVRFSRKR FSETQAEQWW QENRARVYEQ YNVRVVDKSV 300
  301 GSIDNDVHH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle