| Protein: | gi|113565679, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 495 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113565679, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
362.0 | [0..1] | [495..1] |
|
Region A: Residues: [1-153] |
1 11 21 31 41 51
| | | | | |
1 MDMDTSHHYP WLNFSLAHHC EMEEEERGAA AELAAIAGAA PPPKLEDFLG GGCNGGSSGG 60
61 ACPPVQTTAP TAAELYESEL KFLAAGFQLS GAAGAAPPVP ALLPAAALEQ TDETKQLALP 120
121 PQAAVAPPPE QKKAVDSFGQ RTSIYRGVTR HRW
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [154-225] |
1 11 21 31 41 51
| | | | | |
1 TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEEKAARAY DLAALKYWGP STTTNFPVAE 60
61 YEKELEEMKH MT
|
| Detection Method: | |
| Confidence: | 5.26 |
| Match: | 2gccA |
| Description: | SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.236830846471166 | bayes_pls_golite062009 |
|
Region A: Residues: [226-304] |
1 11 21 31 41 51
| | | | | |
1 RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFGTEEEAAE 60
61 AYDIAAIKFR GLNAVTNFE
|
| Detection Method: | |
| Confidence: | 22.154902 |
| Match: | 1gccA |
| Description: | GCC-box binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [305-495] |
1 11 21 31 41 51
| | | | | |
1 IGRYNVESII SSNLPIGSMA GNRSTKAGLE LAPSSSADAI AATEANHTGV APPSTLAFTA 60
61 LPMKYDQADY LSYLALQHHQ QGNLQGLGFG LYSSGVNLDF ANANGNGAMS NCYTNVSLHE 120
121 QQQQHQHQHQ QEQQQDQQDD QSQSSNNSCG SIPFATPIAF SGSYESSMTA AGTFGYYPNV 180
181 AAFQTPIFGM E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
