| Protein: | HNRPDL |
| Organism: | Homo sapiens |
| Length: | 420 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HNRPDL.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-60 | [1..420] | [1..420] |
|
|
3.0E-59 | [1..420] | [1..420] |
|
|
5.0E-59 | [1..420] | [1..420] |
|
|
7.0E-57 | [8..420] | [3..415] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MEVPPRLSHV PPPLFPSAPA TLASRSLSHW RPRPPRQLAP LLPSLAPSSA RQGARRAQRH 60
61 VTAQQPSRLA GGAAIKGGRR RRPDLFRRHF KSSSIQRSAA AAAATRTARQ HPPADSSVTM 120
121 EDMNEYSNIE EFAEGSKINA S
|
| Detection Method: |  |
| Confidence: | 32.39794 |
| Match: | 1fxlA |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [142-318] |
1 11 21 31 41 51
| | | | | |
1 KNQQDDGKMF IGGLSWDTSK KDLTEYLSRF GEVVDCTIKT DPVTGRSRGF GFVLFKDAAS 60
61 VDKVLELKEH KLDGKLIDPK RAKALKGKEP PKKVFVGGLS PDTSEEQIKE YFGAFGEIEN 120
121 IELPMDTKTN ERRGFCFITY TDEEPVKKLL ESRYHQIGSG KCEIKVAQPK EVYRQQQ
|
| Detection Method: | |
| Confidence: | 43.0 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.08350076268185 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.99190411806363 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| snRNA binding | 1.12690941758278 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [319-420] |
1 11 21 31 41 51
| | | | | |
1 QQQKGGRGAA AGGRGGTRGR GRGQGQNWNQ GFNNYYDQGY GNYNSAYGGD QNYSGYGGYD 60
61 YTGYNYGNYG YGQGYADYSG QQSTYGKASR GGGNHQNNYQ PY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
