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View Structure Prediction Details

Protein: unc-49
Organism: Caenorhabditis elegans
Length: 157 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for unc-49.

Description E-value Query
Range
Subject
Range
gi|149698068 - gi|149698068|ref|XP_001498338.1| PREDICTED: glycine receptor, alpha 3 isoform 1 [Equus caballus]
ENSMMUG000000088... - null, null
gi|110347433, gi... - gi|3342236|gb|AAC39917.1| glycine receptor alpha 3 subunit [Homo sapiens], gi|119625136|gb|EAX04731....
ENSPTRT00000030855 - null
157.0 [0..2] [148..292]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVLTETHLM TGTNRRLPPV AYVKAVDVFL GFCYLLVILA LIEYACVAYS KKKNEDRRRR  60
   61 EKKTEHKPAP PTPDILHDVR LAECTCNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 1vryA
Description: Second and Third Transmembrane Domains of the Alpha-1 Subunit of Human Glycine Receptor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [89-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APTSIIAVIK QSNRFCVSHS HIDIVSRAAF PLVFILFNTL FWLILLYKSK RLPYISEHEG  60
   61 DRCDAPDLH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.23
Match: 1oedC
Description: Acetylcholine receptor protein, delta chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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