| Protein: | shk-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 435 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for shk-1.
| Description | E-value | Query Range |
Subject Range |
|
|
310.0 | [0..29] | [426..732] |
|
Region A: Residues: [1-435] |
1 11 21 31 41 51
| | | | | |
1 MASGNSEEGK GMLLRNGDDR IRLPSPQRGT PDTSSTQGHP YTDQIVTINV SGMRFQTFES 60
61 TLSRYPNSLL GDRNKRQHFF VSDTNEFFFD RHRTTFESIL YIYQSGGRVK RPEIVPIDIF 120
121 LKEMRFFQMG DDLLEEFWIA EGYEKPKEVM MPNNKTQRKI WELMEYPDSS LSARIIAFIS 180
181 IAVIALSIIS FCWETVPSDI EEKPINNSAT AELLDEMDEK HYSPFFWIEL MCILWFTIEL 240
241 ILRFISCPCK VTFATSVLNI IDFVAIAPFF VNFFFADTSK SNSSMSFAVL RVLRLVRVFR 300
301 VFKLSRHSVG LQILGKTFRS SVQEFCLLIF FMAIALVLFA SGMYFAEQGE PNSKFTSIPA 360
361 SFWFVLVTMT TVGYGDLVPL SPFGKVVGGM CAMIGVLTLA LPVPIIVANF KHFYRQENRL 420
421 ASMKSKGDDA DDDIA
|
| Detection Method: |  |
| Confidence: | 81.09691 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
