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View Structure Prediction Details

Protein: gi|110743700, gi...
Organism: Arabidopsis thaliana
Length: 464 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110743700, gi....

Description E-value Query
Range
Subject
Range
gi|7485405, gi|1... - pir||T00554 hypothetical protein At2g39440 [imported] - Arabidopsis thaliana, gi|3355473|gb|AAC2783...
352.0 [0..1] [464..310]
gi|37718836, gi|... - gi|37718836|gb|AAR01707.1| expressed protein (alternative splicing product) [Oryza sativa (japonica ...
198.0 [0..14] [462..409]
gi|90657626 - gi|90657626|gb|ABD96924.1| hypothetical protein [Cleome spinosa]
172.0 [0..24] [462..78]
gi|87240970 - gi|87240970|gb|ABD32828.1| {, related [Medicago truncatula]
166.0 [0..128] [461..604]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKEIRSSS VFERSMRFNG LFQDKLRVVE KQNQPPKRFN QKESNSGFTV IPTKQLCRVY  60
   61 LQKPNLLASK GIIDALAKPP HRIFGRRYDQ QNFKSKLRHL HTTSIDPLKH KFGKEENSLR 120
  121 YFTPLGFSSG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRLGDRKKGK DLSFQEEKPK EMKKLCDQKK ERVVREVKSS LVVSTSRDRV AADVKFRDLS  60
   61 SSGFISKDIN AESVDCSHGS PECQTNSEDA HQPSPVSVLE PMFYEDNLDD SEDILDDSED 120
  121 LPYPNFLSLE NQLETLKSES ESYSDGSGME VSSDEESALD SAIKESKESE PIGFLDTQES 180
  181 RDSSYIDDIL AEV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [324-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLGDKNCVPG KRDLVITPKI FEKLEKKYYT ETSWKRSDRK ILFDRVNSSL VEILESFSAT  60
   61 PTWKKPVSRR LGTALSTCGL KQELWKVLSR QEKRSKKKSL AKVPVIDIDE WLELEADDES 120
  121 VVCELESMIV DELLSEVVSF M

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle