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View Structure Prediction Details

Protein: gi|110743700, gi...
Organism: Arabidopsis thaliana
Length: 464 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110743700, gi....

Description E-value Query
Range
Subject
Range
gi|7485405, gi|1... - pir||T00554 hypothetical protein At2g39440 [imported] - Arabidopsis thaliana, gi|3355473|gb|AAC2783...
352.0 [0..1] [464..310]
gi|37718836, gi|... - gi|37718836|gb|AAR01707.1| expressed protein (alternative splicing product) [Oryza sativa (japonica ...
198.0 [0..14] [462..409]
gi|90657626 - gi|90657626|gb|ABD96924.1| hypothetical protein [Cleome spinosa]
172.0 [0..24] [462..78]
gi|87240970 - gi|87240970|gb|ABD32828.1| {, related [Medicago truncatula]
166.0 [0..128] [461..604]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKEIRSSS VFERSMRFNG LFQDKLRVVE KQNQPPKRFN QKESNSGFTV IPTKQLCRVY  60
   61 LQKPNLLASK GIIDALAKPP HRIFGRRYDQ QNFKSKLRHL HTTSIDPLKH KFGKEENSLR 120
  121 YFTPLGFSSG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRLGDRKKGK DLSFQEEKPK EMKKLCDQKK ERVVREVKSS LVVSTSRDRV AADVKFRDLS  60
   61 SSGFISKDIN AESVDCSHGS PECQTNSEDA HQPSPVSVLE PMFYEDNLDD SEDILDDSED 120
  121 LPYPNFLSLE NQLETLKSES ESYSDGSGME VSSDEESALD SAIKESKESE PIGFLDTQES 180
  181 RDSSYIDDIL AEV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [324-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLGDKNCVPG KRDLVITPKI FEKLEKKYYT ETSWKRSDRK ILFDRVNSSL VEILESFSAT  60
   61 PTWKKPVSRR LGTALSTCGL KQELWKVLSR QEKRSKKKSL AKVPVIDIDE WLELEADDES 120
  121 VVCELESMIV DELLSEVVSF M

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle