YRC Public Data Repository - Protein Structure Prediction

Protein:	BAG1_ARATH
Organism:	Arabidopsis thaliana
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAG1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|25294251, gi\|... - gi\|7267292\|emb\|CAB81074.1\| polyubiquitin (ubq10) [Arabidopsis thaliana], gi\|30680061\|ref\|NP_849301.1...	278.0	[0..1]	[332..4]
gi\|114647760 - gi\|114647760\|ref\|XP_001136911.1\| PREDICTED: hypothetical protein [Pan troglodytes]	276.0	[0..1]	[332..75]
gi\|110750162 - gi\|110750162\|ref\|XP_395993.3\| PREDICTED: similar to UBiQuitin family member (ubq-1) isoform 1 [Apis ...	271.0	[0..1]	[332..309]
UBI4P_NICSY - Polyubiquitin (Fragment) OS=Nicotiana sylvestris GN=UBI4 PE=2 SV=1	271.0	[0..2]	[332..1]
ubq-1 - status:Confirmed UniProt:Q8MYQ4 protein_id:AAM22069.2	271.0	[0..1]	[332..4]
gi\|195619382, gi... - gi\|902586\|gb\|AAC49014.1\| ubiquitin, gi\|238013752\|gb\|ACR37911.1\| unknown [Zea mays], gi\|226502871\|ref... gi\|222847188, gi... - gi\|224059606\|ref\|XP_002299930.1\| predicted protein [Populus trichocarpa], gi\|222847188\|gb\|EEE84735.1...	271.0	[0..1]	[332..4]
gi\|82409051 - gi\|82409051\|gb\|ABB73307.1\| ubiquitin [Lotus japonicus] PGSC0003DMP40001... - PGSC0003DMT400027155, PGSC0003DMT400027156 UBIQP_PEA - Polyubiquitin OS=Pisum sativum GN=PU1 PE=2 SV=2 gi\|222837257, gi... - gi\|224132654\|ref\|XP_002327848.1\| predicted protein [Populus trichocarpa], gi\|222837257\|gb\|EEE75636.1... gi\|49532982 - gi\|49532982\|dbj\|BAD26592.1\| polyubiquitin [Populus nigra] gi\|240255762, gi... - gi\|240255764\|ref\|NP_001078353.4\| UBQ10 (POLYUBIQUITIN 10); protein binding [Arabidopsis thaliana], g...	271.0	[0..1]	[332..4]
gi\|422248, gi\|395056 - pir\|\|S34655 polyubiquitin 5 - basidiomycete (Phanerochaete chrysosporium), gi\|395056\|emb\|CAA80851.1\|... gi\|164644573, gi... - gi\|170097832\|ref\|XP_001880135.1\| ubiquitin [Laccaria bicolor S238N-H82], gi\|164644573\|gb\|EDR08822.1\|...	271.0	[0..1]	[332..4]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKMMRNKPT NLPTAGMTNG GRGSGGGGGG GGRESGGRDL EIRPGGMLVQ KRNPDLDPVG  60
   61 PPPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1z2mA
Description:	Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [65-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMIRVRIKYG AVYHEINISP QASFGELKKM LTGPTGIHHQ DQKLMYKDKE RDSKAFLDVS  60
   61 GVKDKSKMVL IEDPLSQEKR FLEMRKIAKT EKASKAISDI SLEVDRLGGR VSAFEMVTKK 120
  121 GGKIAEKDLV TVIELLMNEL IKLDAIVAEG DVKLQRKMQV KRVQNYVETL DALKVKNSMA 180
  181 NGQQKQSSTA QRLAPIQEHN NEERQEQKPI QSLMDMPIQY KEKKQEIEEE PRNSGEGPFV 240
  241 LDSSAKWETF DHHPVTPLSS TTAKNNAIPP RFNWEFFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.30103
Match:	1oqyA
Description:	Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits