YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RP6L1_ARATH
Organism: Arabidopsis thaliana
Length: 637 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for RP6L1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFDDPMDEF KRNRKMEEDS KKVIDVKVAE SDKGFAKFGK AEVPFHIPTL TKPQEEYKIL  60
   61 VDNANNPFEH VLLEKSEDGL RFIHPLEELS VMDFVDRNLS EMRPVKPLPL EET

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.39794
Match: 2hbjA
Description: No description for 2hbjA was found.

Predicted Domain #2
Region A:
Residues: [114-637]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFKLVEEVKD LEDLAAALQS VEEFAVDLEH NQYRTFQGLT CLMQISTRTE DYIVDIFKLW  60
   61 DHIGPYLREL FKDPKKKKVI HGADRDIIWL QRDFGIYVCN LFDTGQASRV LKLERNSLEF 120
  121 LLKHYCGVAA NKEYQKADWR IRPLPDVMKR YAREDTHYLL YIYDVMRMEL HTMAKEDEQS 180
  181 DSPLVEVYKR SYDVCMQLYE KELWTRDSYL HVYGVQTGNL NAVQLSIVAG LCEWRDRIAR 240
  241 ADDESTGYVL PNKTLFDIAK EMPIVVAQLR RLLKSKLPYL ERNFDAVISV IRRSMQNAAA 300
  301 FEPVVQSLKD RRPETVVEMN IEPKIEKTDT GASASSLSLE KVCVDDSKKQ SSGFGVLPLK 360
  361 RKLESDKTVV EKNIEPKIEK TGTEASASSL SSKKVCVDDS KKQSSGFGVL LSKRKFESDN 420
  421 KVKEEVKVSK SKPDKVIIVV DDDDDDDDDE SYEQSTKAAD ALDRVSETPS KGSPSLTQKP 480
  481 KTCNTEVIVL DDDDDSESRE DEDMRRRSEK HRRFMNMKRG FLNI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 109.0
Match: 1dpiA
Description: STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle