YRC Public Data Repository - Protein Structure Prediction

Protein:	SLK1_ARATH
Organism:	Arabidopsis thaliana
Length:	748 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLK1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7486811, gi\|4... - pir\|\|T05795 hypothetical protein M7J2.110 - Arabidopsis thaliana, gi\|46518485\|gb\|AAS99724.1\| At4g25...	230.0	[0..1]	[748..1]
gi\|76633451 - gi\|76633451\|ref\|XP_585747.2\| PREDICTED: similar to nuclear receptor coactivator 6 isoform 1 [Bos tau...	185.0	[0..4]	[717..150]
gi\|113416398 - gi\|113416398\|ref\|XP_001131587.1\| PREDICTED: similar to gamma-aminobutyric acid A receptor, epsilon ...	174.0	[0..23]	[726..30]
gi\|109092262, gi... - gi\|109092266\|ref\|XP_001103659.1\| PREDICTED: similar to nuclear receptor coactivator 6 isoform 3 [Mac...	174.0	[0..4]	[730..150]
gi\|18025526, gi\|... - gi\|51518075\|ref\|YP_068003.1\| LF3 [Macacine herpesvirus 4], gi\|18025526\|gb\|AAK95470.1\| LF3 [cercopith...	173.0	[0..2]	[747..34]
gi\|1182038 - gi\|1182038\|emb\|CAA93290.1\| SPAC25G10.09c [Schizosaccharomyces pombe]	172.0	[0..2]	[732..67]
ARI1A_MOUSE - AT-rich interactive domain-containing protein 1A OS=Mus musculus GN=Arid1a PE=1 SV=1	169.0	[0..33]	[748..152]

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Predicted Domain #1

Region A:
Residues: [1-748]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD  60
   61 GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK PRLEVKQEDM LQQQILQQLI 120
  121 QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN 180
  181 VRPYEVGVCA RKLMMYLYHL QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA 240
  241 LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP 300
  301 NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ 360
  361 VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR QLAKFMELQS LNDLGYPKRY 420
  421 IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI 480
  481 NGPVQAQMVL TSGTMNGSTG NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN 540
  541 NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP 600
  601 SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ 660
  661 LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS GGGRAPSRNN SFKAASNNNL 720
  721 HFSEDISITD HDFSEDGFFN NNDIYGGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	1y0fA
Description:	No description for 1y0fA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits