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View Structure Prediction Details

Protein: gi|110738909, gi...
Organism: Arabidopsis thaliana
Length: 697 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110738909, gi....

Description E-value Query
Range
Subject
Range
PTA10_ARATH - Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 OS=Arabidopsis thaliana GN=PTAC10 PE=1 SV=1
1171.0 [0..1] [697..1]
gi|20161030, gi|... - gi|34907720|ref|NP_915207.1| P0035F12.20 [Oryza sativa (japonica cultivar-group)], gi|20161610|dbj|B...
939.0 [0..45] [682..185]
gi|45544875 - gi|45544875|gb|AAS67373.1| CONSTANS interacting protein 5 [Lycopersicon esculentum]
934.0 [0..72] [693..1]
gi|116057098 - gi|116057098|emb|CAL51525.1| unnamed protein product [Ostreococcus tauri]
127.0 [0..273] [368..398]

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Predicted Domain #1
Region A:
Residues: [1-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQICQTKLNF TFPNPTNPNF CKPKALQWSP PRRISLLPCR GFSSDEFPVD ETFLEKFGPK  60
   61 DKDTEDEARR RNWIERGWAP WEEILTPEAD FARKSLNEGE EVPLQSPEAI EAFKMLRPSY 120
  121 RKKKIKEMGI TEDEWYAKQF EIRGDKPPPL ETSWAGPMVL RQIPPRDWPP RGWEVDRKEL 180
  181 EFIREAHKLM AERVWLEDLD KDLRVGEDAT VDKMCLERFK VFLKQYKEWV EDNKDRLEEE 240
  241 SYKLDQDFYP GRRKRGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [258-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYEDGMYELP FYYPGMVCEG TVTTLHLYQG AFVDIGGVHE GWVPIKGNDW FWIRHFIKVG  60
   61 MHVIVEITVI LRHIFFFRIY KNLNGNCFIL LFLLFFQAKR DPYRFRFPLE LRFVHPNIDH 120
  121 MIFNK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [383-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDFPPIFHRD GDTNPDEIRR DCGRPPEPRK DPGSKPEEEG LLSDHPYVDK LWQIHVAEQM  60
   61 ILGDYEANPA KYEGKKLSEL SDDEDFDEQK DIEYGEAYYK KTKLPKVILK TSVKEL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [499-584]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLEAALTERQ HHNKLMMEAK ARGEGYKIDK LRRNIEMDEY DFLHWRRSLE EREALLRDIS  60
   61 SRQALGLPLE EPGRYKPGSF FGKDQY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [585-697]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPTSALYQYD YWGEPKNSEI SKQERMKDAH NKSIVGKGNV WYDMSYDDAI KQTIEKRKEG  60
   61 STLASQEEET ESEEEEEDDD DFDDFDYSIL SDESSIGYSE QQPLVNGTQV LTD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle