YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6331192
Organism:	Homo sapiens
Length:	835 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6331192.

Description	E-value	Query Range	Subject Range
gi\|114582567 - gi\|114582567\|ref\|XP_515998.2\| PREDICTED: solute carrier family 39 (zinc transporter), member 10 [Pan...	0.0	[1..835]	[118..952]
gi\|109100473 - gi\|109100473\|ref\|XP_001085289.1\| PREDICTED: similar to solute carrier family 39 (zinc transporter), ...	0.0	[1..835]	[125..959]
gi\|76666130 - gi\|76666130\|ref\|XP_599261.2\| PREDICTED: similar to solute carrier family 39 (zinc transporter), memb...	0.0	[2..835]	[87..922]
gi\|55741750 - ref\|NP_065075.1\| solute carrier family 39 (zinc transporter), member 10 [Homo sapiens] SLC39A10 - solute carrier family 39 (zinc transporter), member 10 gi\|168278839 - gi\|168278839\|dbj\|BAG11299.1\| solute carrier family 39, member 10 [synthetic construct]	0.0	[5..835]	[1..831]
gi\|149046180, gi... - gi\|62655048\|ref\|XP_343568.2\| PREDICTED: similar to solute carrier family 39 (zinc transporter), memb...	0.0	[5..835]	[1..834]
S39AA_MOUSE - Zinc transporter ZIP10 OS=Mus musculus GN=Slc39a10 PE=1 SV=1	0.0	[5..835]	[1..833]
gi\|74005457 - gi\|74005457\|ref\|XP_536012.2\| PREDICTED: similar to solute carrier family 39 (zinc transporter), memb...	0.0	[325..835]	[1..511]
gi\|50750222 - gi\|50750222\|ref\|XP_426562.1\| PREDICTED: similar to Solute carrier family 39 (zinc transporter), memb...	3.0E-89	[4..835]	[75..963]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKIEMKVHMH TKFCLICLLT FIFHHCNHCH EEHDHGPEAL HRQHRGMTEL EPSKFSKQAA  60
   61 ENEKKYYIEK LFERYGENGR LSFFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEKLLTNLGL GERKVVEINH EDLGHDHVSH LDILAVQEGK HFHSHNHQHS HNHLNSENQT  60
   61 VTSVSTKRNH KCDPEKETVE VSVKSDDKHM HDHNHRLRHH HRLHHHLDHN NTHHFHNDSI 120
  121 TPSERGEPSN EPSTETNKTQ EQSDVKLPKG KRKKKGRKSN ENSEVITPGF PPNHDQGEQY 180
  181 EHNRVHKPDR VHNPGHSHVH LPERNGHDPG RGHQDLDPDN EGELRHTRKR EAPHVKNNAI 240
  241 ISLRKDLNED DHHHECLNVT QLLKYYGHGA NSPISTDLFT YLCPALLYQI DSRLCIEHFD 300
  301 KLLVEDIN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.45
Match:	1dv4A
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [394-568]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDKNLVPEDE ANIGASAWIC GIISITVISL LSLLGVILVP IINQGCFKFL LTFLVALAVG  60
   61 TMSGDALLHL LPHSQGGHDH SHQHAHGHGH SHGHESNKFL EEYDAVLKGL VALGGIYLLF 120
  121 IIEHCIRMFK HYKQQRGKQK WFMKQNTEES TIGRKLSDHK LNNTPDSDWL QLKPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [569-662]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGTDDSVVSE DRLNETELTD LEGQQESPPK NYLCIEEEKI IDHSHSDGLH TIHEHDLHAA  60
   61 AHNHHGENKT VLRKHNHQWH HKHSHHSHGP CHSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [663-835]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDLKETGIAN IAWMVIMGDG IHNFSDGLAI GAAFSAGLTG GISTSIAVFC HELPHELGDF  60
   61 AVLLKAGMTV KQAIVYNLLS AMMAYIGMLI GTAVGQYANN ITLWIFAVTA GMFLYVALVD 120
  121 MLPEMLHGDG DNEEHGFCPV GQFILQNLGL LFGFAIMLVI ALYEDKIVFD IQF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits