YRC Public Data Repository - Protein Structure Prediction

Protein:	C16orf42
Organism:	Homo sapiens
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C16orf42.

Description	E-value	Query Range	Subject Range
gi\|149052099, gi... - ref\|XP_340769.1\| similar to RIKEN cDNA 0610007P22 [Rattus norvegicus], gi\|149052099\|gb\|EDM03916.1\| s...	511.0	[0..1]	[312..1]
gi\|109127139 - gi\|109127139\|ref\|XP_001088384.1\| PREDICTED: similar to CG4338-PA [Macaca mulatta]	509.0	[0..1]	[312..1]
TSR3_MOUSE - Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3 PE=1 SV=1	506.0	[0..1]	[312..1]
gi\|61825119, gi\|... - gi\|61825119\|ref\|XP_585533.1\| PREDICTED: similar to OTTHUMP00000045502 isoform 1 [Bos taurus], gi\|149...	450.0	[0..1]	[312..1]
gi\|57088115 - gi\|57088115\|ref\|XP_537015.1\| PREDICTED: similar to CG4338-PA [Canis familiaris]	383.0	[0..24]	[312..24]
CG4338-PA - This gene is referred to in FlyBase by the symbol Dmel\CG4338 (CG4338, FBgn0038313). It is a protein... gi\|220944600, gi... - gi\|220954474\|gb\|ACL89780.1\| CG4338-PA [synthetic construct], gi\|220944600\|gb\|ACL84843.1\| CG4338-PA [...	353.0	[0..2]	[270..3]
orf19.13224, orf... - orf19.5802 CGDID:CAL0002246 Assembly 19, Contig19-10234 (44109, 45149) CDS, translated using codon t... gi\|46436962, gi\|... - gi\|68481539\|ref\|XP_715278.1\| hypothetical protein CaO19.13224 [Candida albicans SC5314], gi\|68481408...	350.0	[0..56]	[266..49]
gi\|50755763 - gi\|50755763\|ref\|XP_414890.1\| PREDICTED: similar to RIKEN cDNA 0610007P22 gene [Gallus gallus]	349.0	[0..1]	[266..9]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRRAARGP GAEGGRPRHL PTRSLEAFAE EVGAALQASV EPGAADGEGG PGPAALPCTL  60
   61 AMWELGHCDP RRCTGRKLAR LGLVRCLRLG HRFGGLVLSP VGKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YASPADRQLV AQSGVAVIDC SWARLDETPF GKMRGSHLRL LPYLVAANPV NYGRPYRLSC  60
   61 VEAFAATFCI VGFPDLAVIL LRKFKWGKGF LDLNRQLLDK YAACGSPEEV LQAEQEFLAN 120
  121 AKESPQEEEI DPFDV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.0
Match:	PF04034.4
Description:	No description for PF04034.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [240-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGREFGNPN RPVASTRLPS DTDDSDASED PGPGAERGGA SSSCCEEEQT QGRGAEARAP  60
   61 AEVWKGIKKR QRD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits