YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2780223, gi\|1...
Organism:	Homo sapiens
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2780223, gi|1....

Description	E-value	Query Range	Subject Range
LAT_RAT - Linker for activation of T-cells family member 1 OS=Rattus norvegicus GN=Lat PE=1 SV=1	2.0E-96	[1..233]	[1..241]
gi\|114665040 - gi\|114665040\|ref\|XP_001147360.1\| PREDICTED: similar to 36 kDa phosphothyrosine protein [Pan troglody...	8.0E-96	[1..233]	[1..233]
LAT - linker for activation of T cells	4.0E-95	[1..233]	[1..262]
gi\|109128018 - gi\|109128018\|ref\|XP_001102058.1\| PREDICTED: similar to linker for activation of T cells isoform b [M...	7.0E-94	[1..233]	[1..235]
LAT_MOUSE - Linker for activation of T-cells family member 1 OS=Mus musculus GN=Lat PE=1 SV=1	2.0E-90	[23..233]	[24..242]
gi\|73958612 - gi\|73958612\|ref\|XP_849910.1\| PREDICTED: similar to linker for activation of T cells isoform b [Canis...	3.0E-65	[28..207]	[63..245]
gi\|76653394, gi\|... - gi\|76653406\|ref\|XP_883920.1\| PREDICTED: similar to linker for activation of T cells isoform b isofor...	5.0E-60	[26..229]	[27..233]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEAILVPCV LGLLLLPILA MLMALCVHCH RLPGSYDSTS SDSLYPRGIQ FKRPHTVAPW  60
   61 PPAYPP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTSYPPLSQP DLLPIPRSPQ PLGGSHRTPS SRRDSDGANS VASYENEEPA CEDADEDEDD  60
   61 YHNPGYLVVL PDSTPATSTA APSAPALSTP GIRDSAFSME SIDDYVNVPE SGESAEASLD 120
  121 GSREYVNVSQ ELHPGAAKTE PAALSSQEAE EVEEEGAPDY ENLQELN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.955
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits