YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2780223, gi\|1...
Organism:	Homo sapiens
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2780223, gi|1....

Description	E-value	Query Range	Subject Range
LAT_RAT - Linker for activation of T-cells family member 1 OS=Rattus norvegicus GN=Lat PE=1 SV=1	2.0E-96	[1..233]	[1..241]
gi\|114665040 - gi\|114665040\|ref\|XP_001147360.1\| PREDICTED: similar to 36 kDa phosphothyrosine protein [Pan troglody...	8.0E-96	[1..233]	[1..233]
LAT - linker for activation of T cells	4.0E-95	[1..233]	[1..262]
gi\|109128018 - gi\|109128018\|ref\|XP_001102058.1\| PREDICTED: similar to linker for activation of T cells isoform b [M...	7.0E-94	[1..233]	[1..235]
LAT_MOUSE - Linker for activation of T-cells family member 1 OS=Mus musculus GN=Lat PE=1 SV=1	2.0E-90	[23..233]	[24..242]
gi\|73958612 - gi\|73958612\|ref\|XP_849910.1\| PREDICTED: similar to linker for activation of T cells isoform b [Canis...	3.0E-65	[28..207]	[63..245]
gi\|76653394, gi\|... - gi\|76653406\|ref\|XP_883920.1\| PREDICTED: similar to linker for activation of T cells isoform b isofor...	5.0E-60	[26..229]	[27..233]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEAILVPCV LGLLLLPILA MLMALCVHCH RLPGSYDSTS SDSLYPRGIQ FKRPHTVAPW  60
   61 PPAYPP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTSYPPLSQP DLLPIPRSPQ PLGGSHRTPS SRRDSDGANS VASYENEEPA CEDADEDEDD  60
   61 YHNPGYLVVL PDSTPATSTA APSAPALSTP GIRDSAFSME SIDDYVNVPE SGESAEASLD 120
  121 GSREYVNVSQ ELHPGAAKTE PAALSSQEAE EVEEEGAPDY ENLQELN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.955
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits