YRC Public Data Repository - Protein Structure Prediction

Protein:	C1QTNF9
Organism:	Homo sapiens
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C1QTNF9.

Description	E-value	Query Range	Subject Range
gi\|50731037 - gi\|50731037\|ref\|XP_417136.1\| PREDICTED: similar to Mitochondrial intermediate peptidase [Gallus gall...	6.0E-64	[28..329]	[22..323]
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	4.0E-54	[2..252]	[1401..1655]
gi\|109502538 - gi\|109502538\|ref\|XP_001063239.1\| PREDICTED: similar to adipocyte complement related protein of 30 kD...	6.0E-49	[13..332]	[82..401]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	2.0E-47	[2..261]	[351..629]
gi\|41202595, gi\|... - gi\|56847616\|ref\|NP_001007538.1\| C1q and tumor necrosis factor related protein 9B [Homo sapiens], ref...	4.0E-46	[13..332]	[13..332]
gi\|114648995, gi... - gi\|114648997\|ref\|XP_522628.2\| PREDICTED: C1q and tumor necrosis factor related protein 9 isoform 2 [...	2.0E-45	[13..333]	[13..333]
gi\|109120201 - gi\|109120201\|ref\|XP_001090663.1\| PREDICTED: similar to adipocyte complement related protein of 30 kD...	8.0E-45	[13..333]	[13..333]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIWWLLLAI EICTGNINSQ DTCRQGHPGI PGNPGHNGLP GRDGRDGAKG DKGDAGEPGR  60
   61 PGSPGKDGTS GEKGERGADG KVEAKGIKGD QGSRGSPGKH GPKGLAGPMG EKGLRGETGP 120
  121 QGQKGNKGDV GPTGPEGPRG NIGPLGPTGL PGPMGPIGKP GPKGEAGPTG PQGEPGVRGI 180
  181 RGWKGDRGEK GKIGETLVLP KSAFTVGLTV LSKFPSSDMP IKFDKILYNE FNHYDTAAGK 240
  241 FTCHIAGVYY FTYHITVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [259-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRNVQVSLVK NGVKILHTKD AYMSSEDQAS GGIVLQLKLG DEVWLQVTGG ERFNGLFADE  60
   61 DDDTTFTGFL LFSSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1c3hA
Description:	ACRP30 CALCIUM COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
receptor binding	3.37824597039547	bayes_pls_golite062009
tumor necrosis factor receptor superfamily binding	3.27382150819697	bayes_pls_golite062009
protein binding	2.25413201891408	bayes_pls_golite062009
binding	2.19044184419375	bayes_pls_golite062009
cytokine activity	2.15273244126886	bayes_pls_golite062009
cell surface binding	1.12145675554147	bayes_pls_golite062009
tumor necrosis factor receptor binding	0.83659914028185	bayes_pls_golite062009
CD40 receptor binding	0.817940383456736	bayes_pls_golite062009
eukaryotic cell surface binding	0.3981620493951	bayes_pls_golite062009
hormone activity	0.0434508002092211	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: