| Protein: | gi|2827205, gi|4... |
| Organism: | Homo sapiens |
| Length: | 977 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2827205, gi|4....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..977] | [1..976] |
|
|
0.0 | [1..977] | [1..977] |
|
|
0.0 | [1..977] | [1..978] |
|
|
0.0 | [1..977] | [1..978] |
|
|
0.0 | [1..977] | [1..957] |
|
Region A: Residues: [1-18] |
1 11 21 31 41 51
| | | | | |
1 MAQVAMSTLP VEDEESSE
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [19-81] |
1 11 21 31 41 51
| | | | | |
1 SRMVVTFLMS ALESMCKELA KSKAEVACIA VYETDVFVVG TERGRAFVNT RKDFQKDFVK 60
61 YCV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.788 | 0.149 | transcription factor activity | d.88.1 | SRF-like |
| View | Download | 0.664 | 0.009 | transcription initiation from RNA polymerase II promoter | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.770 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.628 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.614 | N/A | N/A | d.88.1 | SRF-like |
|
Region A: Residues: [82-196] |
1 11 21 31 41 51
| | | | | |
1 EEEEKAAEMH KMKSTTQANR MSVDAVEIET LRKTVEDYFC FCYGKALGKS TVVPVPYEKM 60
61 LRDQSAVVVQ GLPEGVAFKH PENYDLATLK WILENKAGIS FIIKRPFLEP KKHVG
|
| Detection Method: | |
| Confidence: | 40.0 |
| Match: | 2d9bA |
| Description: | No description for 2d9bA was found. |
|
Region A: Residues: [197-316] |
1 11 21 31 41 51
| | | | | |
1 GRVMVTDADR SILSPGGSCG PIKVKTEPTE DSGISLEMAA VTVKEESEDP DYYQYNIQAG 60
61 PSETDDVDEK QPLSKPLQGS HHSSEGNEGT EMEVPAEDDD YSPPSKRPKA NELPQPPVPE 120
121
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.228 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [317-468] |
1 11 21 31 41 51
| | | | | |
1 PANAGKRKVR EFNFEKWNAR ITDLRKQVEE LFERKYAQAI KAKGPVTIPY PLFQSHVEDL 60
61 YVEGLPEGIP FRRPSTYGIP RLERILLAKE RIRFVIKKHE LLNSTREDLQ LDKPASGVKE 120
121 EWYARITKLR KMVDQLFCKK FAEALGSTEA KA
|
| Detection Method: | |
| Confidence: | 31.09691 |
| Match: | 2dn4A |
| Description: | No description for 2dn4A was found. |
|
Region A: Residues: [469-538] |
1 11 21 31 41 51
| | | | | |
1 VPYQKFEAHP NDLYVEGLPE NIPFRSPSWY GIPRLEKIIQ VGNRIKFVIK RPELLTHSTT 60
61 EVTQPRTNTP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.739 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.260 | c.23.1 | CheY-like |
| View | Download | 0.426 | c.10.2 | L domain-like |
| View | Download | 0.373 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.466 | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
|
Region A: Residues: [539-654] |
1 11 21 31 41 51
| | | | | |
1 VKEDWNVRIT KLRKQVEEIF NLKFAQALGL TEAVKVPYPV FESNPEFLYV EGLPEGIPFR 60
61 SPTWFGIPRL ERIVRGSNKI KFVVKKPELV ISYLPPGMAS KINTKALQSP KRPRSP
|
| Detection Method: | |
| Confidence: | 5.51 |
| Match: | 2dzqA |
| Description: | No description for 2dzqA was found. |
|
Region A: Residues: [655-807] |
1 11 21 31 41 51
| | | | | |
1 GSNSKVPEIE VTVEGPNNNN PQTSAVRTPT QTNGSNVPFK PRGREFSFEA WNAKITDLKQ 60
61 KVENLFNEKC GEALGLKQAV KVPFALFESF PEDFYVEGLP EGVPFRRPST FGIPRLEKIL 120
121 RNKAKIKFII KKPEMFETAI KESTSSKSPP RKI
|
| Detection Method: | |
| Confidence: | 25.39794 |
| Match: | 1q60A |
| Description: | Solution Structure of RSGI RUH-004, a GTF2I domain in Mouse cDNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.31986990828723 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 4.02258915980722 | bayes_pls_golite062009 |
| DNA binding | 4.01598187073916 | bayes_pls_golite062009 |
| nucleic acid binding | 3.9329721501879 | bayes_pls_golite062009 |
| transcription factor activity | 3.83217404681534 | bayes_pls_golite062009 |
| binding | 3.0325775548747 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.76277877142766 | bayes_pls_golite062009 |
| protein binding | 1.48651016577672 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.91960306002172 | bayes_pls_golite062009 |
| mitogen-activated protein kinase binding | 0.245342655759921 | bayes_pls_golite062009 |
|
Region A: Residues: [808-977] |
1 11 21 31 41 51
| | | | | |
1 NSSPNVNTTA SGVEDLNIIQ VTIPDDDNER LSKVEKARQL REQVNDLFSR KFGEAIGMGF 60
61 PVKVPYRKIT INPGCVVVDG MPPGVSFKAP SYLEISSMRR ILDSAEFIKF TVIRPFPGLV 120
121 INNQLVDQSE SEGPVIQESA EPSQLEVPAT EEIKETDGSS QIKQEPDPTW
|
| Detection Method: | |
| Confidence: | 42.221849 |
| Match: | 2ejeA |
| Description: | No description for 2ejeA was found. |
