YRC Public Data Repository - Protein Structure Prediction

Protein:	HAMP
Organism:	Homo sapiens
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HAMP.

Description	E-value	Query Range	Subject Range
gi\|13182733 - gi\|13182733\|gb\|AAK14912.1\|AF131292_1 putative liver tumor regressor [Homo sapiens]	1.0E-25	[1..84]	[1..84]
HEPC_PONAB - Hepcidin OS=Pongo abelii GN=HAMP PE=3 SV=1 HEPC_PONPY - Hepcidin precursor - Pongo pygmaeus (Orangutan)	5.0E-25	[1..84]	[1..84]
gi\|156530229, gi... - gi\|157841284\|ref\|NP_001103163.1\| hepcidin antimicrobial peptide [Pan troglodytes], gi\|156530229\|gb\|A...	6.0E-25	[1..84]	[1..84]
gi\|109124352, gi... - gi\|109124352\|ref\|XP_001094393.1\| PREDICTED: hepcidin antimicrobial peptide isoform 2 [Macaca mulatta... CCDS12454.1_1 - null gi\|156530233 - gi\|156530233\|gb\|ABU75213.1\| hepcidin [Papio papio] gi\|156530243 - gi\|156530243\|gb\|ABU75218.1\| hepcidin [Macaca fascicularis]	8.0E-24	[1..84]	[1..84]
HEPC_MOUSE - Hepcidin OS=Mus musculus GN=Hamp PE=2 SV=1	5.0E-20	[1..84]	[1..83]
HEPC_PIG - Hepcidin OS=Sus scrofa GN=HAMP PE=3 SV=1	1.0E-17	[1..84]	[1..82]
gi\|76641231, gi\|... - gi\|84201661\|gb\|AAI11659.1\| Hepcidin antimicrobial peptide [Bos taurus], gi\|76641231\|ref\|XP_589792.2\|... gi\|194499453 - gi\|194499453\|gb\|ACF75105.1\| hepcidin [Bos grunniens] gi\|190336558 - gi\|190336558\|gb\|ABY81280.2\| hepcidin precursor [Bubalus bubalis]	2.0E-15	[1..84]	[1..82]
HEPC_RAT - Hepcidin OS=Rattus norvegicus GN=Hamp PE=3 SV=1	3.0E-13	[1..84]	[1..84]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSSQIWAA CLLLLLLLAS LTSGSVFPQQ TGQLAELQPQ DRAGARASWM PMFQRRRRRD  60
   61 THFPICIFCC GCCHRSKCGM CCKT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.638272
Match:	PF06446.3
Description:	No description for PF06446.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits