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View Structure Prediction Details

Protein: COG2
Organism: Homo sapiens
Length: 738 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COG2.

Description E-value Query
Range
Subject
Range
gi|114573118 - gi|114573118|ref|XP_001148147.1| PREDICTED: component of oligomeric golgi complex 2 isoform 2 [Pan t...
0.0 [1..738] [1..738]
gi|30704725, gi|... - gi|55958308|emb|CAI15359.1| component of oligomeric golgi complex 2 [Homo sapiens], gi|30704725|gb|A...
0.0 [1..738] [1..737]
gi|109508192, gi... - gi|160333172|ref|NP_001103964.1| component of oligomeric golgi complex 2 [Rattus norvegicus], gi|149...
0.0 [1..738] [1..730]
gi|73952612 - gi|73952612|ref|XP_546096.2| PREDICTED: similar to Conserved oligomeric Golgi complex component 2 (L...
0.0 [23..736] [1..715]
COG2_MOUSE - Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=1
0.0 [1..738] [1..731]
gi|29179589, gi|... - gi|47087011|ref|NP_998519.1| component of oligomeric golgi complex 2 [Danio rerio], gi|29179589|gb|A...
0.0 [6..737] [2..727]

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Predicted Domain #1
Region A:
Residues: [1-23]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSRMNLPK GPDTLCFDKD EFM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [24-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEDFDVDHFV SDCRKRVQLE ELRDDLELYY KLLKTAMVEL INKDYADFVN LSTNLVGMDK  60
   61 ALNQLSVPLG QLREEVLSLR SSVSEGIRAV DERMSKQEDI RKKKMCVLRL IQVIRSVEKI 120
  121 EKILNSQSSK ETSALEASSP LLTGQILERI ATEFNQLQFH AVQSKGMPLL DKVRPRIAGI 180
  181 TAMLQQSLEG LLLEGLQTSD VDIIRHCLRT YATIDKTR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.045757
Match: 2jqqA
Description: No description for 2jqqA was found.

Predicted Domain #3
Region A:
Residues: [242-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAEALVGQVL VKPYIDEVII EQFVESHPNG LQVMYNKLLE FVPHHCRLLR EVTGGAISSE  60
   61 KGNTVPGYDF LVNSVWPQIV QGLEEKLPSL FNPGNPDAFH EKYTISMDFV RRLERQCGSQ 120
  121 ASVKRLRAHP AYHSFNKKWN LPVYFQIRFR EIAGSLEAAL TDVLEDAPAE SPYCLLASHR 180
  181 TWSSLRRCWS DEMFLPLLVH RLWRLTLQIL ARYSVFVNEL SLRPISNESP KEIKKPLVTG 240
  241 SKEPSI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [488-670]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQGNTEDQGS GPSETKPVVS ISRTQLVYVV ADLDKLQEQL PELLEIIKPK LEMIGFKNFS  60
   61 SISAALEDSQ SSFSACVPSL SSKIIQDLSD SCFGFLKSAL EVPRLYRRTN KEVPTTASSY 120
  121 VDSALKPLFQ LQSGHKDKLK QAIIQQWLEG TLSESTHKYY ETVSDVLNSV KKMEESLKRL 180
  181 KQA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [671-738]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKTTPANPVG PSGGMSDDDK IRLQLALDVE YLGEQIQKLG LQASDIKSFS ALAELVAAAK  60
   61 DQATAEQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle