YRC Public Data Repository - Protein Structure Prediction

Protein:	SLC35F5
Organism:	Homo sapiens
Length:	523 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLC35F5.

Description	E-value	Query Range	Subject Range
gi\|114580540 - gi\|114580540\|ref\|XP_001153474.1\| PREDICTED: solute carrier family 35, member F5 isoform 1 [Pan trogl...	0.0	[1..523]	[1..523]
gi\|55731827 - gi\|55731827\|emb\|CAH92617.1\| hypothetical protein [Pongo abelii] S35F5_PONAB - Solute carrier family 35 member F5 OS=Pongo abelii GN=SLC35F5 PE=2 SV=1	0.0	[1..523]	[1..523]
gi\|12836420, gi\|... - gi\|21311933\|ref\|NP_083063.1\| solute carrier family 35, member F5 [Mus musculus], gi\|12836420\|dbj\|BAB...	0.0	[1..523]	[1..524]
gi\|109498547, gi... - gi\|62659237\|ref\|XP_222576.3\| PREDICTED: similar to solute carrier family 35, member F5 [Rattus norve...	8.0E-96	[1..523]	[1..524]
gi\|73984198 - gi\|73984198\|ref\|XP_533330.2\| PREDICTED: similar to solute carrier family 35, member F5 [Canis famili...	1.0E-89	[1..498]	[84..582]
gi\|50750752 - gi\|50750752\|ref\|XP_422127.1\| PREDICTED: similar to solute carrier family 35, member F5 [Gallus gallu...	3.0E-68	[45..519]	[21..496]
gi\|10438245 - gi\|10438245\|dbj\|BAB15206.1\| unnamed protein product [Homo sapiens]	1.0E-53	[10..248]	[4..242]
S35F5_MACFA - Solute carrier family 35 member F5 OS=Macaca fascicularis GN=SLC35F5 PE=2 SV=1	2.0E-50	[132..523]	[41..432]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPRRHRGA GRPGVLSSSP PFRLRSAKFS GIALEDLRRA LKTRLQMVCV FVMNRMNSQN  60
   61 SGFTQRRRMA LGIVILLLVD VIWVASSELT SYVFTQYNKP FFSTFAKTSM FVLYLLGFII 120
  121 WKPWRQQCTR GLRGKHAAFF ADAEGYFAAC TTDTTMNSSL SEPLYVPVKF HDLPSEKPES 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNIDTEKTPK KSRVRFSNIM EIRQLPSSHA LEAKLSRMSY PVKEQESILK TVGKLTATQV  60
   61 AKISFFFCFV WFLANLSYQE ALSDTQVAIV NILSSTSGLF TLILAAVFPS NSGDRFTLSK 120
  121 LLAVILSIGG VVLVNLAGSE KPAGRDTVGS IWSLAGAMLY AVYI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [345-523]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VMIKRKVDRE DKLDIPMFFG FVGLFNLLLL WPGFFLLHYT GFEDFEFPNK VVLMCIIING  60
   61 LIGTVLSEFL WLWGCFLTSS LIGTLALSLT IPLSIIADMC MQKVQFSWLF FAGAIPVFFS 120
  121 FFIVTLLCHY NNWDPVMVGI RRIFAFICRK HRIQRVPEDS EQCESLISMH SVSQEDGAS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits