YRC Public Data Repository - Protein Structure Prediction

Protein:	SLC35F5
Organism:	Homo sapiens
Length:	523 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLC35F5.

Description	E-value	Query Range	Subject Range
gi\|114580540 - gi\|114580540\|ref\|XP_001153474.1\| PREDICTED: solute carrier family 35, member F5 isoform 1 [Pan trogl...	0.0	[1..523]	[1..523]
gi\|55731827 - gi\|55731827\|emb\|CAH92617.1\| hypothetical protein [Pongo abelii] S35F5_PONAB - Solute carrier family 35 member F5 OS=Pongo abelii GN=SLC35F5 PE=2 SV=1	0.0	[1..523]	[1..523]
gi\|12836420, gi\|... - gi\|21311933\|ref\|NP_083063.1\| solute carrier family 35, member F5 [Mus musculus], gi\|12836420\|dbj\|BAB...	0.0	[1..523]	[1..524]
gi\|109498547, gi... - gi\|62659237\|ref\|XP_222576.3\| PREDICTED: similar to solute carrier family 35, member F5 [Rattus norve...	8.0E-96	[1..523]	[1..524]
gi\|73984198 - gi\|73984198\|ref\|XP_533330.2\| PREDICTED: similar to solute carrier family 35, member F5 [Canis famili...	1.0E-89	[1..498]	[84..582]
gi\|50750752 - gi\|50750752\|ref\|XP_422127.1\| PREDICTED: similar to solute carrier family 35, member F5 [Gallus gallu...	3.0E-68	[45..519]	[21..496]
gi\|10438245 - gi\|10438245\|dbj\|BAB15206.1\| unnamed protein product [Homo sapiens]	1.0E-53	[10..248]	[4..242]
S35F5_MACFA - Solute carrier family 35 member F5 OS=Macaca fascicularis GN=SLC35F5 PE=2 SV=1	2.0E-50	[132..523]	[41..432]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPRRHRGA GRPGVLSSSP PFRLRSAKFS GIALEDLRRA LKTRLQMVCV FVMNRMNSQN  60
   61 SGFTQRRRMA LGIVILLLVD VIWVASSELT SYVFTQYNKP FFSTFAKTSM FVLYLLGFII 120
  121 WKPWRQQCTR GLRGKHAAFF ADAEGYFAAC TTDTTMNSSL SEPLYVPVKF HDLPSEKPES 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNIDTEKTPK KSRVRFSNIM EIRQLPSSHA LEAKLSRMSY PVKEQESILK TVGKLTATQV  60
   61 AKISFFFCFV WFLANLSYQE ALSDTQVAIV NILSSTSGLF TLILAAVFPS NSGDRFTLSK 120
  121 LLAVILSIGG VVLVNLAGSE KPAGRDTVGS IWSLAGAMLY AVYI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [345-523]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VMIKRKVDRE DKLDIPMFFG FVGLFNLLLL WPGFFLLHYT GFEDFEFPNK VVLMCIIING  60
   61 LIGTVLSEFL WLWGCFLTSS LIGTLALSLT IPLSIIADMC MQKVQFSWLF FAGAIPVFFS 120
  121 FFIVTLLCHY NNWDPVMVGI RRIFAFICRK HRIQRVPEDS EQCESLISMH SVSQEDGAS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits