| Protein: | GGA1 |
| Organism: | Homo sapiens |
| Length: | 639 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [5..639] | [1..635] |
|
|
0.0 | [1..639] | [1..656] |
|
|
0.0 | [1..639] | [1..636] |
|
|
1.0E-99 | [5..639] | [1..632] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MEPAMEPETL EARINRATNP LNKELDWASI NGFCEQLNED FEGPPLATRL LAHKIQSPQE 60
61 WEAIQALTVL ETCMKSCGKR FHDEVGKFRF LNELIKVVSP KYLGSRTSEK VKNKILELLY 120
121 SWTVGLPEEV KIAEAYQMLK KQGIVKS
|
| Detection Method: |  |
| Confidence: | 41.522879 |
| Match: | 1jwfA |
| Description: | ADP-ribosylation factor binding protein Gga1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.44619623515316 | bayes_pls_golite062009 |
| binding | 1.13238817008904 | bayes_pls_golite062009 |
|
Region A: Residues: [148-354] |
1 11 21 31 41 51
| | | | | |
1 DPKLPDDTTF PLPPPRPKNV IFEDEEKSKM LARLLKSSHP EDLRAANKLI KEMVQEDQKR 60
61 MEKISKRVNA IEEVNNNVKL LTEMVMSHSQ GGAAAGSSED LMKELYQRCE RMRPTLFRLA 120
121 SDTEDNDEAL AEILQANDNL TQVINLYKQL VRGEEVNGDA TAGSIPGSTS ALLDLSGLDL 180
181 PPAGTTYPAM PTRPGEQASP EQPSASV
|
| Detection Method: | |
| Confidence: | 3.81 |
| Match: | 1oxzA |
| Description: | ADP-ribosylation factor binding protein Gga1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.13078327723547 | bayes_pls_golite062009 |
| binding | 0.923235137045752 | bayes_pls_golite062009 |
| clathrin binding | 0.456392002173877 | bayes_pls_golite062009 |
|
Region A: Residues: [355-506] |
1 11 21 31 41 51
| | | | | |
1 SLLDDELMSL GLSDPTPPSG PSLDGTGWNS FQSSDATEPP APALAQAPSM ESRPPAQTSL 60
61 PASSGLDDLD LLGKTLLQQS LPPESQQVRW EKQQPTPRLT LRDLQNKSSS CSSPSSSATS 120
121 LLHTVSPEPP RPPQQPVPTE LSLASITVPL ES
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [507-639] |
1 11 21 31 41 51
| | | | | |
1 IKPSNILPVT VYDQHGFRIL FHFARDPLPG RSDVLVVVVS MLSTAPQPIR NIVFQSAVPK 60
61 VMKVKLQPPS GTELPAFNPI VHPSAITQVL LLANPQKEKV RLRYKLTFTM GDQTYNEMGD 120
121 VDQFPPPETW GSL
|
| Detection Method: | |
| Confidence: | 26.30103 |
| Match: | 1na8A |
| Description: | ADP-ribosylation factor binding protein Gga1 domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 0.859533416004855 | bayes_pls_golite062009 |
| binding | 0.575039289605127 | bayes_pls_golite062009 |
