YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL36
Organism:	Homo sapiens
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL36.

Description	E-value	Query Range	Subject Range
gi\|94368091, gi\|... - gi\|94368091\|ref\|XP_985262.1\| PREDICTED: similar to ribosomal protein L36 [Mus musculus], gi\|82884369...	176.0	[0..1]	[105..38]
gi\|109081357 - gi\|109081357\|ref\|XP_001100689.1\| PREDICTED: similar to ribosomal protein L36 [Macaca mulatta]	163.0	[0..1]	[105..1]
gi\|55622646 - gi\|55622646\|ref\|XP_526581.1\| PREDICTED: similar to 60S ribosomal protein L36 [Pan troglodytes]	162.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRYPMAVG LNKGHKVTKN VSKPRHSRRR GRLTKHTKFV RDMIREVCGF APYERRAMEL  60
   61 LKVSKDKRAL KFIKKRVGTH IRAKRKREEL SNVLAAMRKA AAKKD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	70.387216
Match:	PF01158.9
Description:	No description for PF01158.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits