YRC Public Data Repository - Protein Structure Prediction

Protein:	BCAS2
Organism:	Homo sapiens
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCAS2.

Description	E-value	Query Range	Subject Range
gi\|50760411 - gi\|50760411\|ref\|XP_418010.1\| PREDICTED: similar to AMP deaminase 1 (Myoadenylate deaminase) (AMP dea...	3.0E-83	[1..225]	[1812..2036]
gi\|49457027 - gi\|49457027\|emb\|CAG46834.1\| BCAS2 [Homo sapiens]	2.0E-77	[1..225]	[1..225]
gi\|149030453, gi... - gi\|34859703\|ref\|XP_215664.2\| PREDICTED: similar to Breast carcinoma amplified sequence 2 homolog (DN...	2.0E-77	[1..225]	[1..225]
gi\|61366001, gi\|... - gi\|61366001\|gb\|AAX42798.1\| breast carcinoma amplified sequence 2 [synthetic construct], gi\|61365995\|...	7.0E-77	[1..225]	[1..225]
tr\|M3WDE2\|M3WDE2... - BCAS2, pre-mRNA processing factor OS=Felis catus GN=BCAS2 PE=4 SV=1 gi\|57098729 - gi\|57098729\|ref\|XP_533014.1\| PREDICTED: similar to Breast carcinoma amplified sequence 2 homolog (DN...	1.0E-76	[1..225]	[1..225]
gi\|74152043 - gi\|74152043\|dbj\|BAE32056.1\| unnamed protein product [Mus musculus]	1.0E-76	[1..225]	[1..225]
gi\|74354982, gi\|... - gi\|74354982\|gb\|AAI02653.1\| Breast carcinoma amplified sequence 2 [Bos taurus], gi\|62751660\|ref\|NP_00... gi\|194036425 - gi\|194036425\|ref\|XP_001925745.1\| PREDICTED: similar to breast carcinoma amplified sequence 2 [Sus sc...	6.0E-76	[1..225]	[1..225]

Back

Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTGLVAGE VVVDALPYFD QGYEAPGVRE AAAALVEEET RRYRPTKNYL SYLTAPDYSA  60
   61 FE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [63-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDIMRNEFER LAARQPIELL SMKRYELPAP SSGQKNDITA WQECVNNSMA QLEHQAVRIE  60
   61 NLELMSQHGC NAWKVYNENL VHMIEHAQKE LQKLRKHIQD LNWQRKNMQL TAGSKLREME 120
  121 SNWVSLVSKN YEIERTIVQL ENEIYQIKQQ HGEANKENIR QDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.09691
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits