YRC Public Data Repository - Protein Structure Prediction

Protein:	BCAS2
Organism:	Homo sapiens
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCAS2.

Description	E-value	Query Range	Subject Range
gi\|50760411 - gi\|50760411\|ref\|XP_418010.1\| PREDICTED: similar to AMP deaminase 1 (Myoadenylate deaminase) (AMP dea...	3.0E-83	[1..225]	[1812..2036]
gi\|49457027 - gi\|49457027\|emb\|CAG46834.1\| BCAS2 [Homo sapiens]	2.0E-77	[1..225]	[1..225]
gi\|149030453, gi... - gi\|34859703\|ref\|XP_215664.2\| PREDICTED: similar to Breast carcinoma amplified sequence 2 homolog (DN...	2.0E-77	[1..225]	[1..225]
gi\|61366001, gi\|... - gi\|61366001\|gb\|AAX42798.1\| breast carcinoma amplified sequence 2 [synthetic construct], gi\|61365995\|...	7.0E-77	[1..225]	[1..225]
tr\|M3WDE2\|M3WDE2... - BCAS2, pre-mRNA processing factor OS=Felis catus GN=BCAS2 PE=4 SV=1 gi\|57098729 - gi\|57098729\|ref\|XP_533014.1\| PREDICTED: similar to Breast carcinoma amplified sequence 2 homolog (DN...	1.0E-76	[1..225]	[1..225]
gi\|74152043 - gi\|74152043\|dbj\|BAE32056.1\| unnamed protein product [Mus musculus]	1.0E-76	[1..225]	[1..225]
gi\|74354982, gi\|... - gi\|74354982\|gb\|AAI02653.1\| Breast carcinoma amplified sequence 2 [Bos taurus], gi\|62751660\|ref\|NP_00... gi\|194036425 - gi\|194036425\|ref\|XP_001925745.1\| PREDICTED: similar to breast carcinoma amplified sequence 2 [Sus sc...	6.0E-76	[1..225]	[1..225]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTGLVAGE VVVDALPYFD QGYEAPGVRE AAAALVEEET RRYRPTKNYL SYLTAPDYSA  60
   61 FE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [63-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDIMRNEFER LAARQPIELL SMKRYELPAP SSGQKNDITA WQECVNNSMA QLEHQAVRIE  60
   61 NLELMSQHGC NAWKVYNENL VHMIEHAQKE LQKLRKHIQD LNWQRKNMQL TAGSKLREME 120
  121 SNWVSLVSKN YEIERTIVQL ENEIYQIKQQ HGEANKENIR QDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.09691
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits