| Protein: | SMARCC2 |
| Organism: | Homo sapiens |
| Length: | 1214 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMARCC2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1203] | [1..1202] |
|
|
0.0 | [1..1203] | [1..1234] |
|
|
0.0 | [1..1203] | [1..1202] |
|
|
0.0 | [1..1083] | [1..1113] |
|
|
0.0 | [1..1203] | [1..1205] |
|
Region A: Residues: [1-216] |
1 11 21 31 41 51
| | | | | |
1 MAVRKKDGGP NVKYYEAADT VTQFDNVRLW LGKNYKKYIQ AEPPTNKSLS SLVVQLLQFQ 60
61 EEVFGKHVSN APLTKLPIKC FLDFKAGGSL CHILAAAYKF KSDQGWRRYD FQNPSRMDRN 120
121 VEMFMTIEKS LVQNNCLSRP NIFLCPEIEP KLLGKLKDII KRHQGTVTED KNNASHVVYP 180
181 VPGNLEEEEW VRPVMKRDKQ VLLHWGYYPD SYDTWI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [217-413] |
1 11 21 31 41 51
| | | | | |
1 PASEIEASVE DAPTPEKPRK VHAKWILDTD TFNEWMNEED YEVNDDKNPV SRRKKISAKT 60
61 LTDEVNSPDS DRRDKKGGNY KKRKRSPSPS PTPEAKKKNA KKGPSTPYTK SKRGHREEEQ 120
121 EDLTKDMDEP SPVPNVEEVT LPKTVNTKKD SESAPVKGGT MTDLDEQEDE SMETTGKDED 180
181 ENSTGNKGEQ TKNPDLH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [414-526] |
1 11 21 31 41 51
| | | | | |
1 EDNVTEQTHH IIIPSYAAWF DYNSVHAIER RALPEFFNGK NKSKTPEIYL AYRNFMIDTY 60
61 RLNPQEYLTS TACRRNLAGD VCAIMRVHAF LEQWGLINYQ VDAESRPTPM GPP
|
| Detection Method: | |
| Confidence: | 41.39794 |
| Match: | 2fq3A |
| Description: | Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [527-693] |
1 11 21 31 41 51
| | | | | |
1 PTSHFHVLAD TPSGLVPLQP KTPQQTSASQ QMLNFPDKGK EKPTDMQNFG LRTDMYTKKN 60
61 VPSKSKAAAS ATREWTEQET LLLLEALEMY KDDWNKVSEH VGSRTQDECI LHFLRLPIED 120
121 PYLEDSEASL GPLAYQPIPF SQSGNPVMST VAFLASVVDP RVASAAA
|
| Detection Method: | |
| Confidence: | 2.83 |
| Match: | 2nogA |
| Description: | No description for 2nogA was found. |
|
Region A: Residues: [694-1214] |
1 11 21 31 41 51
| | | | | |
1 KSALEEFSKM KEEVPTALVE AHVRKVEEAA KVTGKADPAF GLESSGIAGT TSDEPERIEE 60
61 SGNDEARVEG QATDEKKEPK EPREGGGAIE EEAKEKTSEA PKKDEEKGKE GDSEKESEKS 120
121 DGDPIVDPEK EKEPKEGQEE VLKEVVESEG ERKTKVERDI GEGNLSTAAA AALAAAAVKA 180
181 KHLAAVEERK IKSLVALLVE TQMKKLEIKL RHFEELETIM DREREALEYQ RQQLLADRQA 240
241 FHMEQLKYAE MRARQQHFQQ MHQQQQQPPP ALPPGSQPIP PTGAAGPPAV HGLAVAPASV 300
301 VPAPAGSGAP PGSLGPSEQI GQAGSTAGPQ QQQPAGAPQP GAVPPGVPPP GPHGPSPFPN 360
361 QQTPPSMMPG AVPGSGHPGV AGNAPLGLPF GMPPPPPPPA PSIIPFGSLA DSISINLPAP 420
421 PNLHGHHHHL PFAPGTLPPP NLPVSMANPL HPNLPATTTM PSSLPLGPGL GSAAAQSPAI 480
481 VAAVQGNLLP SASPLPDPGT PLPPDPTAPS PGTVTPVPPP Q
|
| Detection Method: | |
| Confidence: | 42.39794 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
